Hg_chrom3_TN10mRNA_5716
Organism: Heterodera glycines Gene Locus: chr3:7355114-7358679 Feature type: polypeptideProtein Sequence
Length: 585
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.636 | 1.272 | 1.243 | 0.884 | 1.425 | 1.183 | 0.285 | 0.94 | 1.481 | 1.663 | 0.699 | 1.307 | 1.757 | 0.986 | 0.942 | 1.294 | 0.757 | 0.699 | 0.657 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5432
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.813
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.501
|
0.124
|
0.006
|
0.639
|
0.110
|
0.459
|
0.337
|
0.030
|
0.130
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007819
|
1.000
|
1.000
|
Hsc_gene_5871.t1
|
Hsc_gene_5871.t1
|
— |
Q5H9R7.2 Serine/threonine-protein phosphatase 6 regulatory subunit 3 [Homo sapiens]
|
KAI3415876.1 Serine/threonine-protein phosphatase 6 regulatory subunit 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019903|GO:0043666
|
GO:0005575_0.917|GO:0110165_0.912|GO:0005622_0.858|GO:0005737_0.787|GO:0043226_0.621|GO:0043229_0.610|GO:0005829_0.600|GO:0016020_0.514
|
IPR007587+1-543_147-322+|IPR016024+33-445+
|
— |
PF04499+147-322+SIT4_phosphatase-associated_protein
|
— |
PTHR12634+1-543+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-585
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
66714.920
|
4.432
|
-30.500
|
26.496
|
10.256
|
50.256
|
49.744
|
11.111
|
15.385
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
2447.575
|
1446.732
|
1828.269
|
1850.036
|
1734.484
|
1763.517
|
1577.619
|
1814.977
|
1159.851
|
5332.388
|
3544.158
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.108
|
0.217
|
0.126
|
-0.125
|
— |
-0.152
|
— | — |
-2.290
|
— | — | — | — |
No JSON data available for plots.