Hg_chrom3_TN10mRNA_5719
Organism: Heterodera glycines Gene Locus: chr3:7364707-7366990 Feature type: polypeptideProtein Sequence
Length: 422
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.661 | 0.772 | 0.819 | 0.245 | 0.829 | 1.033 | 0.762 | 1.185 | 1.264 | 1.569 | 0.574 | 1.951 | 2.041 | 0.82 | 1.838 | 0.609 | 0.738 | 1.149 | 2.187 | 1.115 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5434
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.451
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
4-27
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.143
|
0.255
|
0.041
|
0.159
|
0.803
|
0.271
|
0.455
|
0.015
|
0.238
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007820
|
1.000
|
1.000
|
Hsc_gene_5873.t1
|
Hsc_gene_5873.t1
|
— |
Q20800.2 Lysophosphatidylinositol acyltransferase 10 [Caenorhabditis elegans]
|
KAI1719037.1 acyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746
|
GO:0008150_0.904|GO:0009987_0.862|GO:0005575_0.829|GO:0110165_0.829|GO:0016020_0.761|GO:0071944_0.745|GO:0003674_0.739|GO:0005886_0.737|GO:0005622_0.708|GO:0043226_0.689|GO:0043229_0.666|GO:0005737_0.653|GO:0043227_0.631|GO:0008152_0.617|GO:0043231_0.609|GO:0044238_0.600|GO:0044237_0.599|GO:0003824_0.595|GO:0005773_0.586|GO:0012505_0.563|GO:0006629_0.554|GO:0016740_0.552|GO:0006793_0.549|GO:0006796_0.547|GO:0019637_0.546|GO:0044255_0.543|GO:0046486_0.534|GO:0006644_0.531|GO:0006650_0.531|GO:0016746_0.523|GO:0005783_0.506
|
IPR002123+88-211_101-224+|IPR032098+270-318+
|
SM00563+101-224+
|
PF01553+88-211+Acyltransferase|PF16076+270-318+Acyltransferase_C-terminus
|
— |
PTHR10983+27-394+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
418-422
|
1.000
|
1-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
49518.760
|
10.050
|
19.000
|
24.645
|
16.351
|
40.758
|
59.242
|
15.166
|
9.479
|
41.232
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
489.262
|
295.279
|
199.118
|
475.943
|
863.969
|
872.523
|
354.859
|
248.531
|
45.204
|
865.287
|
513.823
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.799
|
0.552
|
1.367
|
0.827
|
— |
-1.289
|
-1.924
|
0.658
|
-4.385
|
— | — | — | — |
No JSON data available for plots.