Hg_chrom3_TN10mRNA_5720
Organism: Heterodera glycines Gene Locus: chr3:7368328-7370854 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 1.723 | 1.088 | 0.491 | 1.282 | 0.877 | 0.509 | 2.279 | 1.33 | 1.309 | 1.122 | 1.173 | 0.95 | 0.931 | 0.814 | 0.529 | 0.794 | 1.511 | 0.219 | 0.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5435
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
20-79
|
0.646
|
— | — |
0.000
|
— | — |
0.425
|
0.135
|
0.008
|
0.504
|
0.155
|
0.292
|
0.336
|
0.010
|
0.109
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007821
|
1.000
|
1.000
|
Hsc_gene_5874.t1
|
Hsc_gene_5874.t1
|
— |
P26270.6 26S proteasome non-ATPase regulatory subunit 7 [Drosophila melanogaster]
|
XP_003136965.1 26S proteasome non-ATPase regulatory subunit 7 [Loa loa];EFO27109.1 26S proteasome non-ATPase regulatory subunit 7 [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008233|GO:0008237
|
GO:0005575_0.866|GO:0110165_0.859|GO:0005622_0.759|GO:0008150_0.709|GO:0005737_0.624|GO:0032991_0.623|GO:0016020_0.603|GO:0043226_0.551|GO:0043229_0.546
|
IPR000555+40-154_42-181+|IPR024969+204-315+|IPR037518+43-182+
|
SM00232+42-181+
|
PF01398+40-154+JAB1/Mov34/MPN/PAD-1_ubiquitin_protease|PF13012+204-315+Maintenance_of_mitochondrial_structure_and_function
|
— |
PTHR10540+41-322+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;324-351
|
1.000
|
30-323
|
2o95_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
39403.120
|
6.502
|
0.000
|
29.630
|
9.972
|
49.003
|
50.997
|
15.954
|
13.675
|
49.858
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3262.561
|
3943.472
|
2420.894
|
2931.322
|
3109.924
|
2816.604
|
2574.327
|
3958.884
|
3630.242
|
3392.736
|
3494.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.932
|
-0.565
|
0.384
|
— | — | — |
0.387
|
-0.478
|
— | — | — | — | — |
No JSON data available for plots.