Hg_chrom3_TN10mRNA_5725
Organism: Heterodera glycines Gene Locus: chr3:7390148-7398880 Feature type: polypeptideProtein Sequence
Length: 1,554
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 1.272 | 0.913 | 0.821 | 0.729 | 0.99 | 0.621 | 1.673 | 1.23 | 1.435 | 0.614 | 1.476 | 1.573 | 0.817 | 1.221 | 1.361 | 0.897 | 0.8 | 0.743 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5440
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.546
|
0.196
|
0.018
|
0.359
|
0.145
|
0.368
|
0.131
|
0.128
|
0.166
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007826
|
1.000
|
1.000
|
Hsc_gene_5928.t1
|
Hsc_gene_5928.t1
|
— |
O18191.3 Anaphase-promoting complex subunit 1 [Caenorhabditis elegans]
|
KAI1732843.1 anaphase-promoting complex subunit 1 [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005680
|
GO:0008150_0.859|GO:0005575_0.756|GO:0110165_0.753|GO:0016020_0.678|GO:0005622_0.660|GO:0043226_0.611|GO:0043229_0.596|GO:0043227_0.569|GO:0043231_0.549|GO:0009987_0.506
|
IPR011989+922-1157+|IPR024990+818-1518+
|
— | — | — |
PTHR12827+818-1518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1186-1231
|
2.000
|
1-1185;1232-1554
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
173332.020
|
8.076
|
36.000
|
22.780
|
12.162
|
47.104
|
52.896
|
13.385
|
9.395
|
50.901
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2512.203
|
3978.961
|
2899.353
|
2817.939
|
2620.919
|
2633.472
|
2634.500
|
2901.860
|
1158.865
|
2439.113
|
1890.435
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.686
|
-0.635
|
— |
-0.136
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.