Hg_chrom3_TN10mRNA_5733
Organism: Heterodera glycines Gene Locus: chr3:7437643-7442658 Feature type: polypeptideProtein Sequence
Length: 686
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 1.051 | 1.087 | 0.553 | 1.069 | 0.934 | 0.573 | 1.531 | 0.777 | 1.438 | 1.082 | 1.029 | 1.822 | 1.009 | 1.011 | 1.104 | 0.621 | 1.104 | 1.57 | 0.986 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5448
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.602
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — |
1-24
|
0.976
|
1.000
|
1.000
|
1.000
|
0.231
|
0.118
|
0.046
|
0.199
|
0.743
|
0.500
|
0.724
|
0.171
|
0.227
|
0.173
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003616
|
1.000
|
2.000
|
Hsc_gene_5919.t1;Hsc_gene_5919.t2
|
Hsc_gene_5919.t1;Hsc_gene_5919.t2
|
— |
Q6AX23.1 Sulfhydryl oxidase 2 [Xenopus laevis]
|
KAF7636504.1 Sulfhydryl oxidase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016971|GO:0016972
|
GO:0005575_0.910|GO:0110165_0.910|GO:0016020_0.731|GO:0071944_0.677|GO:0005622_0.674|GO:0005886_0.665|GO:0043226_0.647|GO:0008150_0.629|GO:0043229_0.627|GO:0043227_0.625|GO:0005737_0.613|GO:0043231_0.599|GO:0005773_0.550|GO:0009987_0.541|GO:0012505_0.525|GO:0003674_0.512
|
IPR013766+14-151_37-123+|IPR017905+418-525_427-526+|IPR036249+34-124+|IPR036774+415-563_419-527+|IPR039798+6-673+|IPR040986+318-418+|IPR042568+295-414+
|
— |
PF00085+37-123+Thioredoxin|PF04777+427-526+Erv1_/_Alr_family|PF18371+318-418+Flavin_adenine_dinucleotide_(FAD)-dependent_sulfhydryl_oxidase
|
— |
PTHR22897+6-673+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-686
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
78791.020
|
7.278
|
8.500
|
27.551
|
15.015
|
47.230
|
52.770
|
15.160
|
12.391
|
46.939
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1892.855
|
2346.826
|
1504.757
|
1401.999
|
2307.521
|
3781.834
|
2274.044
|
2500.721
|
682.014
|
1725.593
|
1278.345
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.871
|
-0.880
|
— |
0.687
|
0.729
|
-0.724
|
-0.701
|
— | — | — | — | — | — |