SCN Proteipedia

Hg_chrom3_TN10mRNA_5734

Organism: Heterodera glycines Gene Locus: chr3:7444035-7448832 Feature type: polypeptide

Protein Sequence

Length: 711

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.572	1.243	1.151	0.582	1.688	1.19	0.67	0.774	1.563	1.197	1.257	1.158	1.289	0.46	1.55	1.165	0.553	0.682	1.082	0.455	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5449	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Not_Clustered	0.499

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRLRKTHPKRLGKKAKE,GERIRRALGAIKDPKEEGRRKETKSKKRLRKTHPKRLGKKAK	—	—	—	—	—	—	0.000	—	—	0.865	0.194	0.009	0.245	0.023	0.034	0.035	0.014	0.060	0.007

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003617	1.000	2.000	Hsc_gene_5918.t1;Hsc_gene_5918.t2	Hsc_gene_5918.t1;Hsc_gene_5918.t2	—	P07276.2 DNA repair protein RAD2 [Saccharomyces cerevisiae S288C]	XP_042931914.1 XPG N-terminal domain containing protein [Brugia malayi];VIO89937.1 XPG N-terminal domain containing protein [Brugia malayi]	No	-0.210

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003697\|GO:0003824\|GO:0004518\|GO:0004519\|GO:0005634\|GO:0006289\|GO:0016788	GO:0008150_0.902\|GO:0005575_0.754\|GO:0110165_0.754\|GO:0009987_0.742\|GO:0005622_0.710\|GO:0008152_0.685\|GO:0043170_0.685\|GO:0016020_0.680\|GO:0043226_0.680\|GO:0044238_0.680\|GO:0043229_0.659\|GO:0006139_0.651\|GO:0050896_0.638\|GO:0003674_0.637\|GO:0090304_0.632\|GO:0043227_0.606\|GO:0006259_0.592\|GO:0043231_0.587\|GO:0051716_0.586\|GO:0006950_0.541\|GO:0033554_0.517	IPR001044+2-19_53-76+\|IPR006084+24-38_71-90_394-411_415-435_469-484+\|IPR006085+1-95_1-98+\|IPR006086+395-464_398-479+\|IPR008918+466-499+\|IPR019974+398-412+\|IPR029060+3-479+\|IPR036279+464-622+	SM00279+466-499+\|SM00484+395-464+\|SM00485+1-98+	PF00752+1-95+XPG_N-terminal_domain\|PF00867+398-479+XPG_I-region	—	PTHR16171+309-695+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	301-375;649-711	2.000	1-300;376-648	6tuw_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.635	82007.910	6.724	1.500	33.896	9.142	55.415	44.585	17.440	16.456	42.335

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	2139.064	1890.218	2149.149	1799.881	1687.055	1648.130	1427.195	1971.223	4192.095	1499.516	2653.479

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.208	-0.147	-0.125	—	-0.199	—	-0.325	2.462	-1.065	—	—	—

No JSON data available for plots.

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