Hg_chrom3_TN10mRNA_5735
Organism: Heterodera glycines Gene Locus: chr3:7449577-7450126 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.0 | 1.806 | 1.589 | 0.335 | 1.294 | 1.494 | 0.462 | 0.485 | 1.942 | 1.443 | 1.471 | 1.713 | 0.809 | 0.934 | 1.189 | 0.971 | 0.477 | 0.736 | 0.747 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5450
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.706
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRIDLGVKQTKKMVKKRVQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.499
|
0.149
|
0.024
|
0.716
|
0.208
|
0.451
|
0.374
|
0.178
|
0.158
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q5PQ30.1 LysM and putative peptidoglycan-binding domain-containing protein 1 [Xenopus laevis]
|
KAH7712299.1 LysM domain containing protein [Aphelenchus avenae]
|
No
|
-0.520
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.921|GO:0110165_0.912|GO:0005622_0.876|GO:0043226_0.828|GO:0043229_0.825|GO:0016020_0.807|GO:0043227_0.773|GO:0043231_0.764|GO:0005634_0.681|GO:0031974_0.585|GO:0043233_0.585|GO:0070013_0.584|GO:0031981_0.577|GO:0005654_0.556
|
IPR018392+1-40_3-40+|IPR036779+1-50+
|
— |
PF01476+3-40+LysM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-103
|
2djp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
12123.850
|
5.890
|
-0.500
|
33.010
|
7.767
|
56.311
|
43.689
|
16.505
|
16.505
|
40.777
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
230.863
|
191.987
|
341.798
|
329.605
|
272.214
|
340.847
|
107.788
|
285.646
|
132.382
|
209.531
|
176.467
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
0.643
|
— |
-0.307
|
0.339
|
-1.662
|
— |
-1.276
|
— | — | — | — | — |
No JSON data available for plots.