Hg_chrom3_TN10mRNA_5736
Organism: Heterodera glycines Gene Locus: chr3:7451132-7452963 Feature type: polypeptideProtein Sequence
Length: 268
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 1.041 | 0.678 | 0.386 | 1.368 | 0.957 | 0.311 | 1.306 | 1.244 | 1.109 | 1.583 | 1.756 | 1.555 | 0.646 | 1.828 | 1.119 | 0.673 | 0.848 | 0.574 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5451
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.527
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKARMMKEPK,RKKFHMRQKLRRAVK,RKSLKFMHSYKCAPKRTAK
|
41-63
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.661
|
0.278
|
0.017
|
0.400
|
0.034
|
0.083
|
0.086
|
0.046
|
0.030
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007830
|
1.000
|
1.000
|
Hsc_gene_5917.t1
|
— | — |
Q20822.2 Signal recognition particle subunit SRP68 [Caenorhabditis elegans]
|
KAI1702884.1 RNA-binding signal recognition particle 68 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
|
GO:0005575_0.923|GO:0110165_0.913|GO:0005622_0.892|GO:0005737_0.786|GO:0005829_0.633|GO:0008150_0.591|GO:0043226_0.590|GO:0016020_0.583|GO:0043229_0.579|GO:0043227_0.536|GO:0003674_0.514|GO:0043231_0.512
|
IPR026258+3-203_34-201+|IPR034652+20-206+|IPR038253+14-244+
|
— |
PF16969+34-201+RNA-binding_signal_recognition_particle_68
|
— |
PTHR12860+3-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26
|
1.000
|
27-268
|
7qwq_v
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
31440.390
|
10.538
|
23.500
|
33.955
|
11.940
|
54.104
|
45.896
|
22.015
|
11.940
|
39.925
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
2493.033
|
1414.386
|
1678.212
|
2052.492
|
2140.226
|
1735.174
|
1235.617
|
1661.347
|
4906.201
|
2758.321
|
3678.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.400
|
0.399
|
— |
-0.287
|
-0.482
|
— |
-0.286
|
— | — | — | — | — |
No JSON data available for plots.