Hg_chrom3_TN10mRNA_5737
Organism: Heterodera glycines Gene Locus: chr3:7453254-7455625 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.579 | 1.515 | 0.975 | 0.793 | 1.341 | 1.474 | 0.502 | 1.149 | 1.873 | 1.709 | 0.581 | 1.578 | 1.064 | 1.326 | 1.329 | 0.766 | 0.879 | 0.522 | 0.295 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5452
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.742
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.633
|
0.148
|
0.004
|
0.530
|
0.065
|
0.196
|
0.235
|
0.053
|
0.067
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007831
|
1.000
|
1.000
|
Hsc_gene_5916.t1
|
Hsc_gene_5916.t1
|
— |
Q95Q17.1 Mediator of RNA polymerase II transcription subunit 7 [Caenorhabditis elegans]
|
KAF7638733.1 Mediator of RNA polymerase II transcription subunit 7 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0006357|GO:0016592
|
GO:0008150_0.941|GO:0009987_0.728|GO:0065007_0.704|GO:0050789_0.693|GO:0005575_0.685|GO:0110165_0.677|GO:0050794_0.671|GO:0005622_0.634|GO:0016020_0.587|GO:0043226_0.555|GO:0043229_0.540|GO:0003674_0.532|GO:0043227_0.523|GO:0043231_0.513|GO:0005488_0.507
|
IPR009244+13-185_18-163+|IPR037212+79-167+|IPR044888+74-178+
|
— |
PF05983+18-163+MED7_protein
|
— |
PTHR21428+13-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-261
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
29697.090
|
5.190
|
-5.000
|
26.054
|
7.663
|
49.042
|
50.958
|
12.644
|
13.410
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1722.109
|
2230.758
|
1741.473
|
956.220
|
968.006
|
951.756
|
1867.324
|
1624.796
|
1092.929
|
2836.903
|
2089.486
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.587
|
-1.359
|
-0.756
|
— | — |
0.984
|
0.665
|
0.345
|
— | — | — | — | — |
No JSON data available for plots.