Hg_chrom3_TN10mRNA_5741
Organism: Heterodera glycines Gene Locus: chr3:7477344-7478486 Feature type: polypeptideProtein Sequence
Length: 224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.453 | 0.974 | 0.616 | 0.967 | 1.259 | 0.797 | 2.232 | 1.29 | 1.87 | 1.015 | 2.101 | 1.488 | 0.429 | 0.911 | 0.765 | 0.732 | 0.541 | 1.717 | 0.263 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5456
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.777
|
0.240
|
0.041
|
0.489
|
0.120
|
0.055
|
0.037
|
0.001
|
0.105
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000797
|
5.000
|
1.000
|
Hsc_gene_5886.t1
|
Hsc_gene_26372.t1;Hsc_gene_26372.t2;Hsc_gene_5886.t1
|
— |
Q3B7N1.1 Chromodomain-helicase-DNA-binding protein 1-like [Bos taurus]
|
KAH7727594.1 chromodomain-helicase-DNA-binding protein 1-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0140658
|
GO:0008150_0.891|GO:0009987_0.778|GO:0005575_0.765|GO:0110165_0.765|GO:0005622_0.727|GO:0043226_0.664|GO:0043229_0.660|GO:0016020_0.651|GO:0003674_0.647|GO:0043227_0.597|GO:0043231_0.586|GO:0005488_0.543|GO:0071840_0.529|GO:0016043_0.526|GO:0065007_0.525|GO:0050789_0.514
|
IPR000330+27-211+|IPR014001+20-210_36-196+|IPR027417+17-210+|IPR038718+4-223+
|
SM00487+20-210+
|
PF00176+27-211+SNF2-related_domain
|
— |
PTHR10799+19-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-224
|
9t4v_K
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
25590.530
|
7.513
|
5.000
|
26.786
|
12.946
|
47.768
|
52.232
|
15.625
|
11.161
|
41.964
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
110.430
|
229.626
|
156.275
|
127.100
|
98.258
|
97.706
|
109.383
|
158.065
|
149.067
|
5.176
|
66.844
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.786
|
-0.991
|
— |
-0.404
|
— | — |
0.587
|
-0.390
|
5.249
|
— |
5.001
|
— | — |
No JSON data available for plots.