Hg_chrom3_TN10mRNA_5742
Organism: Heterodera glycines Gene Locus: chr3:7479251-7483568 Feature type: polypeptideProtein Sequence
Length: 796
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.125 | 0.876 | 0.708 | 0.736 | 1.298 | 1.578 | 0.852 | 0.942 | 1.005 | 1.171 | 0.933 | 1.182 | 1.082 | 0.87 | 1.436 | 1.328 | 0.741 | 0.799 | 0.773 | 0.185 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5457
|
— | — |
0.667
|
— |
1.000
|
1.000
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRRKGAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.525
|
0.061
|
0.014
|
0.620
|
0.109
|
0.034
|
0.146
|
0.131
|
0.203
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007835
|
1.000
|
1.000
|
Hsc_gene_5912.t1
|
Hsc_gene_5912.t1
|
— |
Q9H694.2 Protein bicaudal C homolog 1 [Homo sapiens]
|
KAI6226364.1 Protein bicaudal C-like protein 1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0005515
|
GO:0008150_0.875|GO:0003674_0.712|GO:0009987_0.685|GO:0005488_0.669|GO:0065007_0.646|GO:0050789_0.638|GO:0050794_0.621|GO:0048519_0.523|GO:0048523_0.513
|
IPR001660+721-787_733-785+|IPR004087+10-90_94-170+|IPR004088+98-166+|IPR013761+727-787_729-789+|IPR036612+90-172_93-168+
|
SM00322+10-90_94-170+|SM00454+721-787+
|
PF00013+98-166+KH_domain|PF00536+733-785+SAM_domain_(Sterile_alpha_motif)
|
— |
PTHR10627+66-786+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37;542-728
|
2.000
|
38-541;729-796
|
6gy4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
87447.190
|
8.713
|
19.500
|
26.759
|
7.412
|
50.503
|
49.497
|
15.075
|
11.683
|
50.251
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
960.567
|
2358.482
|
806.917
|
1161.403
|
1693.843
|
2367.356
|
755.919
|
1464.342
|
13.031
|
214.608
|
128.218
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.777
|
-1.159
|
0.634
|
0.512
|
0.497
|
-1.637
|
-0.799
|
-0.811
|
-4.205
|
6.702
|
3.982
|
— | — |
No JSON data available for plots.