Hg_chrom3_TN10mRNA_5743
Organism: Heterodera glycines Gene Locus: chr3:7484610-7485924 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.034 | 0.606 | 1.149 | 1.111 | 0.427 | 0.463 | 1.667 | 1.111 | 1.276 | 1.094 | 2.288 | 0.926 | 0.534 | 2.834 | 1.508 | 1.093 | 0.673 | 0.0 | 0.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5458
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RKTKRRV,RLKLRKKRRHRGRRDG,RRLRANNELVLHRIRSYRR
|
21-59
|
0.866
|
35-76
|
0.940
|
— | — |
0.027
|
— | — |
0.261
|
0.266
|
0.003
|
0.195
|
0.065
|
0.044
|
0.116
|
0.046
|
0.106
|
0.916
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001965
|
1.000
|
3.000
|
Hsc_gene_5911.t1;Hsc_gene_5911.t2;Hsc_gene_5911.t3
|
Hsc_gene_5911.t1;Hsc_gene_5911.t2;Hsc_gene_5911.t3
|
— | — |
CAD5218629.1 unnamed protein product [Bursaphelenchus okinawaensis];CAG9111173.1 unnamed protein product [Bursaphelenchus okinawaensis]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;176-180
|
1.000
|
8-175
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
20823.150
|
11.274
|
23.000
|
34.444
|
7.778
|
57.778
|
42.222
|
24.444
|
10.000
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
105.039
|
196.523
|
114.036
|
16.558
|
23.857
|
517.197
|
24.938
|
256.360
|
37.991
|
0.000
|
16.282
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.020
|
-3.708
|
-2.672
|
— |
4.457
|
-4.368
|
-1.128
|
-3.217
|
— | — | — | — | — |
No JSON data available for plots.