Hg_chrom3_TN10mRNA_5744
Organism: Heterodera glycines Gene Locus: chr3:7486133-7488401 Feature type: polypeptideProtein Sequence
Length: 562
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 0.828 | 0.776 | 1.289 | 2.284 | 1.369 | 1.123 | 1.246 | 0.751 | 0.769 | 1.132 | 1.361 | 1.137 | 0.787 | 1.453 | 1.093 | 0.904 | 0.297 | 0.547 | 0.314 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5459
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RSMKRKC,REKGQRGRGKEKGNGRDGRIKTAENGRGGGGKPGGENR
|
— | — |
15-35
|
0.988
|
— | — |
0.000
|
— | — |
0.824
|
0.085
|
0.008
|
0.396
|
0.050
|
0.054
|
0.089
|
0.009
|
0.087
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001212
|
4.000
|
1.000
|
Hsc_gene_5910.t1
|
Hsc_gene_5910.t1
|
— |
P09088.2 Mechanosensory protein 3 [Caenorhabditis elegans]
|
KAF7638735.1 Homeobox domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.854|GO:0009987_0.749|GO:0065007_0.724|GO:0050789_0.714|GO:0032502_0.704|GO:0048856_0.704|GO:0050794_0.704|GO:0005575_0.700|GO:0110165_0.692|GO:0032501_0.684|GO:0003674_0.674|GO:0005488_0.674|GO:0005622_0.656|GO:0007275_0.654|GO:0048731_0.642|GO:0043226_0.637|GO:0043229_0.610|GO:0007399_0.573|GO:0016020_0.572|GO:0008152_0.570|GO:0043170_0.570|GO:0019222_0.568|GO:0031323_0.559|GO:0044237_0.559|GO:0009058_0.556|GO:0009059_0.556|GO:0044249_0.556|GO:0010467_0.555|GO:0060255_0.545|GO:0006139_0.542|GO:0044238_0.542|GO:0080090_0.538|GO:0009889_0.529|GO:0031326_0.528|GO:0090304_0.528|GO:0010556_0.526|GO:0016070_0.526|GO:0034654_0.525|GO:0032774_0.523|GO:0141187_0.523|GO:0097159_0.521|GO:0048518_0.520|GO:0010468_0.516|GO:0003676_0.510|GO:0048869_0.504
|
IPR001356+468-528_470-532_471-527_471-529+|IPR001781+38-103_39-96_40-101_110-175_111-168_112-148+|IPR009057+468-530+|IPR017970+503-526+|IPR050453+450-544+
|
SM00132+39-96_111-168+|SM00389+470-532+
|
PF00046+471-527+Homeodomain|PF00412+40-101+LIM_domain
|
— |
PTHR24208+450-544+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
176-562
|
1.000
|
1-175
|
5hod_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
62935.690
|
5.276
|
-12.000
|
35.053
|
8.363
|
57.117
|
42.883
|
17.082
|
17.972
|
46.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
985.562
|
484.528
|
427.006
|
284.972
|
99.362
|
293.753
|
488.856
|
648.503
|
3597.125
|
591.372
|
1879.552
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.411
|
-0.903
|
-0.475
|
-1.553
|
1.579
|
0.747
|
1.038
|
— |
2.496
|
-3.496
|
— | — | — |
No JSON data available for plots.