Hg_chrom3_TN10mRNA_5746
Organism: Heterodera glycines Gene Locus: chr3:7486133-7488401 Feature type: polypeptideProtein Sequence
Length: 557
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 0.835 | 0.751 | 1.3 | 2.334 | 1.381 | 1.133 | 1.257 | 0.718 | 0.752 | 1.142 | 1.373 | 1.097 | 0.794 | 1.429 | 1.077 | 0.912 | 0.299 | 0.552 | 0.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5459
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RSMKRKC,REKGQRGRGKEKGNGRDGRIKTAENGRGGGGKPGGENR
|
— | — |
15-35
|
0.988
|
— | — |
0.000
|
— | — |
0.827
|
0.087
|
0.009
|
0.398
|
0.051
|
0.053
|
0.088
|
0.008
|
0.087
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001212
|
4.000
|
1.000
|
Hsc_gene_5910.t1
|
Hsc_gene_5910.t1
|
— |
P09088.2 Mechanosensory protein 3 [Caenorhabditis elegans]
|
KAI1723121.1 homeobox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.855|GO:0009987_0.751|GO:0065007_0.730|GO:0050789_0.720|GO:0050794_0.710|GO:0032502_0.708|GO:0048856_0.708|GO:0005575_0.699|GO:0110165_0.690|GO:0032501_0.689|GO:0003674_0.681|GO:0005488_0.681|GO:0007275_0.662|GO:0005622_0.652|GO:0048731_0.648|GO:0043226_0.631|GO:0043229_0.605|GO:0007399_0.579|GO:0008152_0.577|GO:0043170_0.577|GO:0019222_0.574|GO:0031323_0.565|GO:0044237_0.565|GO:0016020_0.563|GO:0009058_0.561|GO:0009059_0.561|GO:0044249_0.561|GO:0010467_0.560|GO:0060255_0.559|GO:0044238_0.547|GO:0080090_0.547|GO:0006139_0.544|GO:0009889_0.537|GO:0031326_0.536|GO:0010556_0.533|GO:0016070_0.533|GO:0090304_0.533|GO:0048518_0.531|GO:0034654_0.530|GO:0032774_0.529|GO:0141187_0.529|GO:0097159_0.527|GO:0010468_0.524|GO:0003676_0.513|GO:0048869_0.511|GO:0030154_0.501
|
IPR001356+463-523_465-527_466-522_466-524+|IPR001781+38-103_39-96_105-170_106-163_107-143+|IPR009057+463-525+|IPR017970+498-521+|IPR050453+445-539+
|
SM00132+39-96_106-163+|SM00389+465-527+
|
PF00046+466-522+Homeodomain
|
— |
PTHR24208+445-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
171-557
|
1.000
|
1-170
|
5hod_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
62332.960
|
5.211
|
-13.000
|
35.189
|
8.259
|
57.271
|
42.729
|
17.056
|
18.133
|
46.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
985.562
|
484.528
|
427.006
|
284.972
|
99.362
|
293.753
|
488.856
|
648.503
|
3597.125
|
591.372
|
1879.552
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.411
|
-0.903
|
-0.475
|
-1.553
|
1.579
|
0.747
|
1.038
|
— |
2.496
|
-3.496
|
— | — | — |
No JSON data available for plots.