Hg_chrom3_TN10mRNA_5749
Organism: Heterodera glycines Gene Locus: chr3:7496503-7497463 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 1.019 | 0.724 | 0.824 | 0.797 | 1.022 | 0.711 | 1.594 | 1.505 | 1.777 | 0.604 | 0.703 | 1.66 | 0.919 | 1.22 | 1.081 | 0.849 | 0.905 | 1.532 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5461
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.201
|
0.881
|
0.065
|
0.177
|
0.038
|
0.128
|
0.060
|
0.311
|
0.123
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001966
|
3.000
|
1.000
|
Hsc_gene_5908.t1
|
Hsc_gene_5908.t1
|
— |
Q3T131.1 Ubiquinone biosynthesis O-methyltransferase, mitochondrial [Bos taurus]
|
XP_008933808.1 PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial, partial [Merops nubicus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006744|GO:0008757|GO:0010420|GO:0061542
|
GO:0008150_0.792|GO:0005575_0.760|GO:0110165_0.754|GO:0005622_0.655|GO:0008152_0.651|GO:0005737_0.637|GO:0016020_0.636|GO:0009987_0.633|GO:0009058_0.614|GO:0003674_0.538|GO:0043226_0.523|GO:0044237_0.522|GO:0043229_0.519
|
IPR010233+8-243+|IPR013216+65-166+|IPR029063+8-250_28-246+
|
— |
PF08241+65-166+Methyltransferase_domain
|
— |
PTHR43464+20-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-251
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
28102.560
|
8.265
|
7.000
|
21.912
|
12.351
|
43.028
|
56.972
|
13.147
|
8.765
|
47.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
849.279
|
1242.014
|
1067.450
|
832.716
|
698.429
|
659.753
|
730.975
|
991.599
|
545.125
|
973.152
|
789.712
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.448
|
-0.714
|
-0.250
|
-0.286
|
— | — |
0.483
|
-0.298
|
— | — | — | — | — |
No JSON data available for plots.