Hg_chrom3_TN10mRNA_5751
Organism: Heterodera glycines Gene Locus: chr3:7500034-7503646 Feature type: polypeptideProtein Sequence
Length: 796
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.95 | 0.76 | 0.571 | 0.65 | 0.838 | 0.902 | 0.628 | 1.884 | 1.061 | 1.969 | 0.457 | 1.182 | 2.024 | 1.329 | 1.051 | 0.844 | 0.865 | 1.218 | 0.87 | 0.554 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5463
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.530
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.089
|
0.166
|
0.021
|
0.116
|
0.450
|
0.423
|
0.276
|
0.003
|
0.749
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003618
|
2.000
|
1.000
|
Hsc_gene_5906.t1
|
Hsc_gene_5906.t1
|
— |
Q8NBS3.3 Solute carrier family 4 member 11 [Homo sapiens]
|
KAF7640043.1 CBN-ABTS-2 protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005452|GO:0006820|GO:0016020
|
GO:0008150_0.965|GO:0009987_0.925|GO:0005575_0.878|GO:0110165_0.878|GO:0016020_0.843|GO:0006810_0.842|GO:0051179_0.842|GO:0051234_0.842|GO:0071944_0.813|GO:0005886_0.811|GO:0003674_0.791|GO:0055085_0.707|GO:0006811_0.663|GO:0034220_0.661|GO:0065007_0.642|GO:0005215_0.627|GO:0022857_0.627|GO:0098660_0.616|GO:0015075_0.593|GO:0015711_0.582|GO:0015318_0.578|GO:0015701_0.559|GO:0022804_0.556|GO:0008514_0.554|GO:0015106_0.543
|
IPR003020+28-794+|IPR011531+256-423_475-795+|IPR016152+40-225_135-228+
|
— |
PF00955+256-423_475-795+HCO3-_transporter_integral_membrane_domain
|
— |
PTHR11453+28-794+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-796
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
88982.120
|
7.592
|
15.000
|
20.101
|
14.070
|
38.065
|
61.935
|
11.935
|
8.166
|
47.864
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
613.285
|
60.551
|
280.863
|
1185.658
|
864.206
|
1751.586
|
1114.897
|
994.176
|
88.055
|
272.605
|
193.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.985
|
4.154
|
2.186
|
-0.488
|
1.034
|
-0.643
|
-0.919
|
0.305
|
— |
3.828
|
— | — | — |
No JSON data available for plots.