Hg_chrom3_TN10mRNA_5752
Organism: Heterodera glycines Gene Locus: chr3:7500039-7503364 Feature type: polypeptideProtein Sequence
Length: 766
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.941 | 0.759 | 0.593 | 0.675 | 0.87 | 0.937 | 0.606 | 1.958 | 1.102 | 1.905 | 0.435 | 1.152 | 1.994 | 1.356 | 1.066 | 0.858 | 0.856 | 1.207 | 0.803 | 0.576 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5463
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.530
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.114
|
0.165
|
0.013
|
0.180
|
0.486
|
0.260
|
0.247
|
0.002
|
0.575
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003618
|
2.000
|
1.000
|
Hsc_gene_5906.t1
|
Hsc_gene_5906.t1
|
— |
Q8NBS3.3 Solute carrier family 4 member 11 [Homo sapiens]
|
KAF7640043.1 CBN-ABTS-2 protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005452|GO:0006820|GO:0016020
|
GO:0008150_0.966|GO:0009987_0.927|GO:0005575_0.879|GO:0110165_0.879|GO:0016020_0.840|GO:0051179_0.840|GO:0006810_0.837|GO:0051234_0.837|GO:0071944_0.802|GO:0005886_0.800|GO:0003674_0.789|GO:0055085_0.697|GO:0006811_0.657|GO:0034220_0.653|GO:0065007_0.648|GO:0005215_0.618|GO:0022857_0.618|GO:0098660_0.611|GO:0015075_0.588|GO:0015711_0.577|GO:0015318_0.573|GO:0015701_0.557|GO:0022804_0.552|GO:0008514_0.551|GO:0015106_0.540
|
IPR003020+480-764+|IPR011531+256-423_479-765+|IPR016152+40-225_135-228+
|
— |
PF00955+256-423_479-765+HCO3-_transporter_integral_membrane_domain
|
— |
PTHR11453+480-764+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-766
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
85723.070
|
7.285
|
12.000
|
20.496
|
14.099
|
38.642
|
61.358
|
12.010
|
8.486
|
47.911
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
613.285
|
60.551
|
280.863
|
1185.658
|
864.206
|
1751.586
|
1114.897
|
994.176
|
88.055
|
272.605
|
193.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.985
|
4.154
|
2.186
|
-0.488
|
1.034
|
-0.643
|
-0.919
|
0.305
|
— |
3.828
|
— | — | — |
No JSON data available for plots.