Hg_chrom3_TN10mRNA_5758
Organism: Heterodera glycines Gene Locus: chr3:7519682-7521380 Feature type: polypeptideProtein Sequence
Length: 147
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.633 | 1.266 | 0.989 | 0.469 | 0.907 | 1.047 | 0.648 | 3.061 | 1.361 | 1.747 | 0.928 | 1.601 | 1.323 | 0.392 | 1.249 | 1.166 | 0.781 | 0.618 | 2.093 | 0.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5469
|
— | — |
1.778
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.785
|
0.228
|
0.056
|
0.408
|
0.038
|
0.014
|
0.021
|
0.003
|
0.080
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000797
|
5.000
|
1.000
|
Hsc_gene_5886.t1
|
— | — |
F4I2H2.1 Switch 2 [Arabidopsis thaliana]
|
KAH7727594.1 chromodomain-helicase-DNA-binding protein 1-like protein [Aphelenchus avenae]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0140658
|
GO:0008150_0.901|GO:0009987_0.777|GO:0005575_0.729|GO:0110165_0.718|GO:0005622_0.684|GO:0003674_0.638|GO:0043226_0.636|GO:0043229_0.625|GO:0016020_0.602|GO:0071840_0.565|GO:0016043_0.563|GO:0043227_0.559|GO:0043231_0.559|GO:0065007_0.525|GO:0005488_0.524|GO:0050789_0.514|GO:0008152_0.501
|
IPR000330+52-141+|IPR014001+46-147+|IPR027417+17-140+|IPR038718+25-146+
|
— |
PF00176+52-141+SNF2-related_domain
|
— |
PTHR10799+54-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-147
|
1.000
|
1-143
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
16948.430
|
8.565
|
6.500
|
29.252
|
14.286
|
51.701
|
48.299
|
18.367
|
10.884
|
42.177
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
53.047
|
107.872
|
83.995
|
60.152
|
49.956
|
48.260
|
60.989
|
92.930
|
57.366
|
0.000
|
24.585
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.590
|
-0.980
|
-0.373
|
— | — | — |
0.842
|
-0.469
|
— | — | — | — | — |
No JSON data available for plots.