SCN Proteipedia

Hg_chrom3_TN10mRNA_5760

Organism: Heterodera glycines Gene Locus: chr3:7523175-7528735 Feature type: polypeptide

Protein Sequence

Length: 1,240

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.947	0.863	0.484	1.112	1.599	0.91	0.72	0.766	1.022	0.948	1.307	2.419	1.322	0.946	1.926	0.783	0.714	0.782	0.62	0.664	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5471	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.958

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRTSVYKVRKRGTKK,RKRGTKKCQCQERKKEM,RRCLSSAVGPMLGATRNRR,RKKEMPMPREKERNAKRERKKCQERKKEMPMPREKKEMPMPREKERNANAKRERKKCQCQERERKKCPREKERNANAKRERKKCQCQERKKEMPMPREKERNANAKRERKKCQCQERKKEMPMPREKERNAKRERKKCQERKKEMPMPREKERNANAKRERKKCQCQERKKEMPMPREKERNANAKRERKKCQCQERKKEMPMPREKERNANAKRERKKCQERK	—	—	—	—	—	—	0.000	—	—	0.123	0.099	0.010	0.194	0.307	0.302	0.248	0.002	0.467	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007838	1.000	1.000	Hsc_gene_5884.t1	Hsc_gene_5884.t1	—	Q9BMK9.1 Chloride channel protein clh-3 [Caenorhabditis elegans]	KAI3415891.1 Chloride channel protein 2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085	GO:0008150_0.948\|GO:0009987_0.922\|GO:0005575_0.883\|GO:0110165_0.883\|GO:0051179_0.870\|GO:0016020_0.867\|GO:0006810_0.865\|GO:0051234_0.865\|GO:0005886_0.816\|GO:0071944_0.816\|GO:0003674_0.783\|GO:0006811_0.751\|GO:0055085_0.751\|GO:0034220_0.740\|GO:0005215_0.727\|GO:0005216_0.727\|GO:0015075_0.727\|GO:0015267_0.727\|GO:0022803_0.727\|GO:0022857_0.727\|GO:0098660_0.667\|GO:0032501_0.630\|GO:0015318_0.596\|GO:0006820_0.587\|GO:0006821_0.587\|GO:0015698_0.587\|GO:0065007_0.570\|GO:0098656_0.544\|GO:0098661_0.541\|GO:1902476_0.541\|GO:0008509_0.529\|GO:0015103_0.526\|GO:0015108_0.526\|GO:0098590_0.526\|GO:0005253_0.519\|GO:0005254_0.516	IPR001807+200-607_212-229_243-262_300-319_517-537_559-575_576-595_614-628+\|IPR014743+127-629+\|IPR046342+629-746_637-704_911-993+\|IPR050970+77-992+	—	PF00654+200-607+Voltage_gated_chloride_channel	G3DSA:1.10.3080.10:FF:000022+133-628+Chloride_channel_protein	PTHR45720+77-992+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-30;711-1240	1.000	31-710	6qvu_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.638	141994.710	10.095	81.500	31.855	9.355	48.952	51.048	19.597	12.258	43.710

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	magenta	159.334	110.535	532.429	220.191	98.875	69.097	96.591	251.426	24.260	161.712	102.804

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.040	0.858	-1.165	-1.186	-0.503	0.495	1.757	-1.236	—	—	—	—	—

No JSON data available for plots.

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