Hg_chrom3_TN10mRNA_5769
Organism: Heterodera glycines Gene Locus: chr3:7549263-7551655 Feature type: polypeptideProtein Sequence
Length: 429
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 1.084 | 0.932 | 0.482 | 1.632 | 1.494 | 1.082 | 1.282 | 0.881 | 1.04 | 0.6 | 1.645 | 1.489 | 0.807 | 1.713 | 0.932 | 0.841 | 0.565 | 1.255 | 0.206 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5480
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RREGHRTQPISRRTKRN
|
14-48
|
0.926
|
— | — | — | — |
0.000
|
— | — |
0.889
|
0.144
|
0.018
|
0.157
|
0.009
|
0.024
|
0.023
|
0.014
|
0.047
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007846
|
1.000
|
1.000
|
Hsc_gene_5876.t1
|
Hsc_gene_5876.t1
|
— | — |
KAI1719039.1 alcohol dehydrogenase transcription factor myb/SANT-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
IPR006578+16-111_17-106+
|
SM00595+16-111+
|
PF10545+17-106+Alcohol_dehydrogenase_transcription_factor_Myb/SANT-like
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
150-341;423-429
|
2.000
|
1-149;342-422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
48293.890
|
5.676
|
-5.500
|
29.837
|
10.256
|
51.981
|
48.019
|
14.918
|
14.918
|
47.319
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
1722.189
|
7504.098
|
1962.770
|
1168.169
|
846.653
|
1107.482
|
1116.404
|
1869.949
|
1938.333
|
240.005
|
967.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.165
|
-2.821
|
-0.640
|
-0.497
|
0.403
|
— |
0.655
|
-0.604
|
2.888
|
— | — | — | — |
No JSON data available for plots.