Hg_chrom3_TN10mRNA_5770
Organism: Heterodera glycines Gene Locus: chr3:7553139-7553518 Feature type: polypeptideProtein Sequence
Length: 107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.543 | 2.173 | 1.02 | 0.322 | 0.623 | 0.719 | 0.668 | 0.0 | 0.831 | 0.505 | 1.558 | 1.649 | 1.038 | 2.336 | 1.144 | 0.935 | 0.919 | 1.416 | 1.438 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5481
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
8-30
|
0.994
|
— | — |
0.000
|
— | — |
0.467
|
0.213
|
0.031
|
0.561
|
0.087
|
0.093
|
0.195
|
0.005
|
0.127
|
0.303
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007847
|
1.000
|
1.000
|
Hsc_gene_8494.t1
|
Hsc_gene_261.t1;Hsc_gene_5889.t1;Hsc_gene_5891.t1;Hsc_gene_5892.t1;Hsc_gene_5894.t1;Hsc_gene_5896.t1;Hsc_gene_5899.t1;Hsc_gene_8494.t1
|
— |
P53022.2 Major sperm protein 2 [Globodera rostochiensis]
|
ARR95827.1 major sperm protein [Heterodera schachtii];ARR95832.1 major sperm protein [Heterodera glycines];ARR95828.1 major sperm protein [Heterodera schachtii];ARR95829.1 major sperm protein [Heterodera schachtii];ARR95831.1 major sperm protein [Heterodera schachtii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.567
|
IPR000535+1-106_29-93+|IPR008962+29-106+|IPR013783+22-107+|IPR051155+28-106+
|
— |
PF00635+29-93+MSP_(Major_sperm_protein)_domain
|
— |
PTHR22920+28-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-107
|
0.000
|
— |
1grw_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
11954.680
|
10.477
|
7.000
|
25.234
|
7.477
|
49.533
|
50.467
|
15.888
|
9.346
|
59.813
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
119.203
|
21.952
|
19.994
|
5.155
|
61.535
|
343.483
|
3.445
|
29.163
|
147.026
|
229.470
|
194.137
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.229
|
-1.849
|
3.548
|
2.498
|
-6.629
|
-3.673
|
-2.933
|
— |
-4.726
|
— | — | — |
No JSON data available for plots.