Hg_chrom3_TN10mRNA_5777
Organism: Heterodera glycines Gene Locus: chr3:7564043-7566661 Feature type: polypeptideProtein Sequence
Length: 478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 0.973 | 1.065 | 1.154 | 0.662 | 1.019 | 0.772 | 0.941 | 0.883 | 1.414 | 0.634 | 1.231 | 1.801 | 0.684 | 1.238 | 1.584 | 0.892 | 1.236 | 0.644 | 0.492 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5487
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.615
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — |
5-43
|
0.797
|
— | — |
0.000
|
— | — |
0.385
|
0.306
|
0.042
|
0.149
|
0.898
|
0.243
|
0.354
|
0.099
|
0.136
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007851
|
1.000
|
1.000
|
Hsc_gene_5936.t1
|
Hsc_gene_5936.t1
|
— | — |
KAI1733234.1 prolactin regulatory element-binding protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0005515
|
GO:0003674_0.829|GO:0005488_0.750|GO:0005575_0.744|GO:0110165_0.735|GO:0008150_0.730|GO:0016020_0.687|GO:0009987_0.675|GO:0071944_0.662|GO:0005886_0.648|GO:0065007_0.633|GO:0050789_0.613|GO:0005622_0.609|GO:0050794_0.599|GO:0043226_0.583|GO:0005737_0.573|GO:0051179_0.569|GO:0006810_0.563|GO:0051234_0.563|GO:0043227_0.561|GO:0043229_0.549|GO:0043231_0.539|GO:0005515_0.518|GO:0005773_0.513|GO:0071840_0.511|GO:0016043_0.510|GO:0012505_0.505
|
IPR001680+142-191_220-258_331-370_373-446+|IPR015943+8-451+|IPR036322+88-444+|IPR045260+12-471+
|
SM00320+142-191_220-258_331-370_373-446+
|
— | — |
PTHR23284+12-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
52782.330
|
7.649
|
6.500
|
21.967
|
10.879
|
46.653
|
53.347
|
12.134
|
9.833
|
54.393
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
917.265
|
1062.823
|
757.474
|
800.299
|
893.453
|
932.862
|
746.852
|
766.949
|
488.691
|
1411.248
|
1015.866
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.719
|
-0.546
|
0.189
|
0.126
|
— |
-0.312
|
-0.386
|
— | — | — | — | — | — |
No JSON data available for plots.