Hg_chrom3_TN10mRNA_5778
Organism: Heterodera glycines Gene Locus: chr3:7567142-7569067 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 1.126 | 0.484 | 0.417 | 1.09 | 0.807 | 0.519 | 1.332 | 1.345 | 1.342 | 2.238 | 0.997 | 1.345 | 0.792 | 1.532 | 0.865 | 0.754 | 0.88 | 0.931 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5488
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRGKRRR,RKKEKKRAAKLRKPRQ,KKDAGNAEVKNVLKKLKL,KKKLKSRQNVRRKYARKKE,KKLKSRQNVRRKYARKKEK,RRKYARKKEKKRAAKLRKP,RKYARKKEKKRAAKLRKPR,AIRARVFEIGAKSKEKRERKKEKREKRKSKKDAGN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.767
|
0.089
|
0.005
|
0.395
|
0.063
|
0.054
|
0.089
|
0.006
|
0.108
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007852
|
1.000
|
1.000
|
Hsc_gene_5937.t1
|
Hsc_gene_5937.t1
|
— | — |
KAI3420456.1 hypothetical protein GPALN_003753 [Globodera pallida]
|
MEN8152600
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR011333+211-344+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-413
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
47809.360
|
11.095
|
59.500
|
34.140
|
10.412
|
52.785
|
47.215
|
24.939
|
9.201
|
39.952
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1362.441
|
792.334
|
1096.062
|
1195.936
|
1337.415
|
1324.468
|
1009.190
|
1427.508
|
1213.176
|
1982.206
|
1652.621
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.238
|
0.457
|
0.235
|
0.130
|
— |
-0.382
|
— |
-0.358
|
— | — | — | — | — |
No JSON data available for plots.