Hg_chrom3_TN10mRNA_5779
Organism: Heterodera glycines Gene Locus: chr3:7569220-7570839 Feature type: polypeptideProtein Sequence
Length: 394
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.18 | 0.944 | 0.969 | 1.05 | 1.269 | 0.846 | 0.967 | 0.635 | 1.41 | 1.715 | 0.731 | 1.344 | 1.269 | 0.488 | 1.088 | 1.197 | 0.957 | 0.577 | 0.195 | 0.075 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5489
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.474
|
0.149
|
0.010
|
0.681
|
0.116
|
0.045
|
0.121
|
0.057
|
0.104
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001213
|
2.000
|
3.000
|
Hsc_gene_5938.t1;Hsc_gene_5939.t1;Hsc_gene_5940.t1
|
Hsc_gene_5938.t1;Hsc_gene_5939.t1;Hsc_gene_5940.t1
|
— |
O13066.1 Ran GTPase-activating protein 1 [Xenopus laevis]
|
KAI1730209.1 ran GTPase-activating protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0005515
|
GO:0008150_0.940|GO:0005575_0.771|GO:0110165_0.771|GO:0009987_0.724|GO:0005622_0.691|GO:0005737_0.639|GO:0003674_0.580|GO:0065007_0.553|GO:0050789_0.537|GO:0005488_0.517
|
IPR001611+95-106_214-237_274-293+|IPR027038+5-355+|IPR032675+3-325+
|
SM00368+29-56_92-119_122-148_187-214_215-242_243-270_272-299+
|
PF13516+95-106_214-237_274-293+Leucine_Rich_repeat
|
— |
PTHR24113+5-355+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
394-394
|
1.000
|
1-393
|
9b62_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
42430.540
|
4.895
|
-8.500
|
24.365
|
6.345
|
45.939
|
54.061
|
11.421
|
12.944
|
51.269
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
500.076
|
1245.784
|
654.795
|
576.016
|
524.049
|
431.789
|
514.169
|
690.906
|
256.425
|
256.447
|
256.438
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.157
|
-1.250
|
— |
-0.169
|
-0.265
|
0.263
|
0.574
|
-0.283
|
— | — | — | — | — |
No JSON data available for plots.