Hg_chrom3_TN10mRNA_5780
Organism: Heterodera glycines Gene Locus: chr3:7572940-7574289 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.309 | 0.972 | 0.818 | 0.998 | 1.179 | 0.66 | 0.995 | 0.643 | 1.501 | 1.695 | 0.682 | 1.513 | 1.161 | 0.495 | 1.05 | 1.378 | 0.896 | 0.585 | 0.247 | 0.095 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5490
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.557
|
0.293
|
0.017
|
0.565
|
0.144
|
0.067
|
0.129
|
0.043
|
0.199
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001213
|
2.000
|
3.000
|
Hsc_gene_5938.t1;Hsc_gene_5939.t1;Hsc_gene_5940.t1
|
Hsc_gene_5938.t1;Hsc_gene_5939.t1;Hsc_gene_5940.t1
|
— |
O13066.1 Ran GTPase-activating protein 1 [Xenopus laevis]
|
KAI1730209.1 ran GTPase-activating protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0005515
|
GO:0008150_0.929|GO:0005575_0.771|GO:0110165_0.771|GO:0009987_0.714|GO:0005622_0.706|GO:0005737_0.655|GO:0003674_0.551|GO:0065007_0.523|GO:0050789_0.512|GO:0016020_0.502
|
IPR001611+59-70_178-201_238-257+|IPR027038+2-289+|IPR032675+1-289+
|
SM00368+56-83_86-112_151-178_179-206_207-234_236-263+
|
PF13516+59-70_178-201_238-257+Leucine_Rich_repeat
|
— |
PTHR24113+2-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
309-311
|
1.000
|
1-308
|
9b62_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
33119.000
|
5.221
|
-4.000
|
22.508
|
6.109
|
44.373
|
55.627
|
10.932
|
11.576
|
52.733
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
darkorange
|
206.861
|
123.316
|
81.100
|
67.035
|
64.413
|
48.977
|
191.862
|
235.841
|
120.816
|
509.702
|
343.037
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.835
|
-1.016
|
— | — | — |
1.983
|
2.161
|
— | — | — | — | — | — |
No JSON data available for plots.