Hg_chrom3_TN10mRNA_5781
Organism: Heterodera glycines Gene Locus: chr3:7574323-7576595 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.699 | 1.398 | 0.978 | 0.327 | 1.319 | 0.649 | 0.753 | 2.215 | 0.985 | 1.069 | 1.151 | 0.745 | 2.198 | 0.852 | 0.71 | 1.221 | 0.83 | 0.959 | 1.217 | 0.558 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5491
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.563
|
0.269
|
0.103
|
0.562
|
0.185
|
0.176
|
0.135
|
0.069
|
0.063
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007853
|
1.000
|
1.000
|
Hsc_gene_5941.t1
|
Hsc_gene_5941.t1
|
— |
P0C660.1 Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog [Caenorhabditis briggsae]
|
KAI1714422.1 phytanoyl-CoA dioxygenase (PhyH) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.849|GO:0003824_0.745|GO:0016491_0.616|GO:0016705_0.604|GO:0016706_0.599|GO:0051213_0.599
|
IPR008775+22-281+
|
— |
PF05721+22-281+Phytanoyl-CoA_dioxygenase_(PhyH)
|
— |
PTHR20883+22-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-316
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
35749.200
|
6.502
|
0.000
|
28.797
|
15.823
|
50.949
|
49.051
|
15.506
|
13.291
|
49.051
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1008.070
|
979.351
|
884.675
|
831.159
|
772.262
|
726.669
|
735.309
|
996.369
|
574.192
|
1757.489
|
1250.362
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.376
|
-0.374
|
— |
-0.138
|
— | — |
0.351
|
-0.296
|
— | — | — | — | — |
No JSON data available for plots.