Hg_chrom3_TN10mRNA_5782
Organism: Heterodera glycines Gene Locus: chr3:7576851-7579680 Feature type: polypeptideProtein Sequence
Length: 488
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 1.287 | 0.931 | 0.707 | 1.605 | 1.261 | 0.561 | 0.82 | 1.321 | 1.302 | 1.397 | 1.326 | 1.309 | 0.946 | 0.795 | 0.966 | 0.806 | 0.9 | 0.788 | 0.603 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5492
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.653
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRSESLGRNAKFEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.693
|
0.213
|
0.009
|
0.612
|
0.290
|
0.191
|
0.172
|
0.025
|
0.105
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007854
|
1.000
|
1.000
|
Hsc_gene_5942.t1
|
Hsc_gene_5942.t1
|
— |
Q0IIF7.3 Ubiquitin carboxyl-terminal hydrolase 14 [Bos taurus]
|
KAI1696315.1 ubiquitin carboxyl-terminal hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0005515|GO:0016579|GO:0043161
|
GO:0003674_0.789|GO:0005575_0.760|GO:0008150_0.760|GO:0110165_0.760|GO:0005622_0.706|GO:0003824_0.657|GO:0016787_0.628|GO:0140096_0.627|GO:0008233_0.608|GO:0019783_0.593|GO:0043226_0.577|GO:0016020_0.567|GO:0101005_0.563|GO:0043229_0.555|GO:0043227_0.524|GO:0008152_0.502
|
IPR000626+1-84_2-69+|IPR001394+99-480+|IPR018200+100-115_411-429+|IPR028889+99-483+|IPR029071+1-76+|IPR038765+97-480+|IPR044635+1-486+
|
SM00213+2-69+
|
PF00443+99-480+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR43982+1-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-488
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
55569.550
|
5.775
|
-4.000
|
29.508
|
9.426
|
51.639
|
48.361
|
14.754
|
14.754
|
45.082
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkturquoise
|
3373.647
|
3751.725
|
2387.269
|
3697.094
|
3901.620
|
3273.875
|
2523.717
|
3277.394
|
3559.517
|
3535.309
|
3545.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.881
|
-0.158
|
0.739
|
— |
-0.238
|
-0.365
|
— | — | — | — | — | — | — |
No JSON data available for plots.