Hg_chrom3_TN10mRNA_5784
Organism: Heterodera glycines Gene Locus: chr3:7580549-7583007 Feature type: polypeptideProtein Sequence
Length: 543
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 0.728 | 1.205 | 1.08 | 1.443 | 1.039 | 0.57 | 0.921 | 1.064 | 1.593 | 1.116 | 1.842 | 1.586 | 0.602 | 1.128 | 1.0 | 0.694 | 0.949 | 0.567 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5494
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.816
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.557
|
0.089
|
0.008
|
0.573
|
0.158
|
0.120
|
0.204
|
0.011
|
0.148
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007856
|
1.000
|
1.000
|
Hsc_gene_5944.t1
|
Hsc_gene_5944.t1
|
— |
Q9GSX9.1 Synembryn [Caenorhabditis elegans]
|
KAH7724000.1 synembryn [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.836|GO:0005575_0.829|GO:0110165_0.823|GO:0009987_0.794|GO:0005622_0.764|GO:0003674_0.740|GO:0005737_0.708|GO:0071944_0.678|GO:0005488_0.675|GO:0005515_0.656|GO:0065007_0.614|GO:0050789_0.593|GO:0016020_0.589|GO:0043226_0.523|GO:0007154_0.506|GO:0043229_0.504|GO:0005886_0.503|GO:0023052_0.503
|
IPR019318+62-540_70-520+
|
— |
PF10165+70-520+Guanine_nucleotide_exchange_factor_synembryn
|
— |
PTHR12425+62-540+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
444-543
|
1.000
|
1-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
62019.440
|
5.357
|
-8.000
|
30.018
|
10.497
|
48.435
|
51.565
|
14.733
|
15.285
|
44.199
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1208.052
|
2013.486
|
1658.085
|
1361.712
|
1237.781
|
1220.720
|
1431.604
|
1455.333
|
1230.849
|
470.070
|
796.118
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.510
|
-0.701
|
-0.175
|
-0.170
|
— |
0.239
|
— | — | — | — | — | — | — |
No JSON data available for plots.