Hg_chrom3_TN10mRNA_5785
Organism: Heterodera glycines Gene Locus: chr3:7583389-7586790 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.699 | 0.783 | 1.486 | 0.58 | 0.962 | 0.801 | 0.601 | 0.601 | 1.709 | 1.04 | 1.093 | 1.131 | 2.204 | 0.971 | 1.276 | 1.236 | 0.985 | 0.546 | 0.555 | 0.848 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5495
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PKPS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.511
|
0.244
|
0.024
|
0.798
|
0.112
|
0.185
|
0.095
|
0.096
|
0.097
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007857
|
1.000
|
1.000
|
Hsc_gene_5945.t1
|
Hsc_gene_22569.t1;Hsc_gene_22569.t2;Hsc_gene_22570.t1;Hsc_gene_5945.t1
|
— |
P17248.3 Tryptophan--tRNA ligase, cytoplasmic [Bos taurus]
|
KAI3420450.1 tRNA synthetases class I (W and Y) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004830|GO:0005524|GO:0006418|GO:0006436
|
GO:0005575_0.782|GO:0110165_0.778|GO:0005622_0.740|GO:0005737_0.665|GO:0003674_0.606|GO:0008150_0.563|GO:0009987_0.502
|
IPR001412+112-122+|IPR002305+101-201_257-379+|IPR002306+102-412_105-387_117-133_169-188_251-272_295-305+|IPR014729+27-298+
|
— |
PF00579+101-201_257-379+tRNA_synthetases_class_I_(W_and_Y)
|
G3DSA:1.10.240.10:FF:000003+300-416+Tryptophan--tRNA_ligase,_cytoplasmic|G3DSA:3.40.50.620:FF:000033+27-299+tryptophan--tRNA_ligase,_cytoplasmic
|
PTHR10055+20-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-416
|
5ujj_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
47435.990
|
6.643
|
0.500
|
28.606
|
12.740
|
49.760
|
50.240
|
14.663
|
13.942
|
47.596
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1276.956
|
770.892
|
977.027
|
1208.922
|
1476.608
|
1136.226
|
1689.301
|
818.466
|
1479.655
|
1447.902
|
1461.510
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.112
|
0.512
|
0.416
|
0.257
|
-0.363
|
0.583
|
-0.579
|
1.188
|
— | — | — | — | — |
No JSON data available for plots.