Hg_chrom3_TN10mRNA_5788
Organism: Heterodera glycines Gene Locus: chr3:7593764-7594345 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 0.581 | 0.682 | 0.431 | 0.938 | 1.763 | 0.372 | 3.125 | 1.389 | 1.436 | 2.178 | 0.368 | 1.563 | 0.601 | 0.383 | 1.429 | 1.025 | 0.568 | 0.481 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5498
|
— | — |
3.000
|
3.000
|
3.000
|
1.000
|
3.000
|
4.000
|
1.000
|
3.000
|
4.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.923
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKTALPIVYQRVRQKIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.796
|
0.214
|
0.063
|
0.358
|
0.142
|
0.094
|
0.142
|
0.062
|
0.215
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000117
|
10.000
|
4.000
|
Hsc_gene_14127.t1;Hsc_gene_15599.t1;Hsc_gene_20567.t1;Hsc_gene_23071.t1
|
— | — | — |
KAI1712819.1 putative zinc finger BED domain-containing protein 4-like [Ditylenchus destructor]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
157-160
|
1.000
|
1-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
18419.270
|
10.303
|
16.000
|
31.875
|
15.000
|
57.500
|
42.500
|
22.500
|
9.375
|
38.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
186.885
|
119.863
|
176.991
|
106.896
|
77.415
|
70.828
|
30.007
|
139.973
|
103.916
|
468.945
|
312.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.335
|
-0.302
|
-0.620
|
-0.497
|
— |
-1.232
|
0.882
|
-2.083
|
— | — | — | — | — |
No JSON data available for plots.