Hg_chrom3_TN10mRNA_5792
Organism: Heterodera glycines Gene Locus: chr3:7597360-7600425 Feature type: polypeptideProtein Sequence
Length: 580
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 1.323 | 1.223 | 0.297 | 1.006 | 1.282 | 0.8 | 0.69 | 1.034 | 1.048 | 0.993 | 1.116 | 1.437 | 0.862 | 1.513 | 1.108 | 0.876 | 0.888 | 1.326 | 0.963 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5502
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RREYEKYNVSTKMKRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.601
|
0.125
|
0.024
|
0.525
|
0.091
|
0.046
|
0.050
|
0.004
|
0.040
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007861
|
1.000
|
1.000
|
Hsc_gene_5953.t1
|
Hsc_gene_22099.t1;Hsc_gene_5953.t1
|
— |
A8X371.1 Eukaryotic translation initiation factor 3 subunit D [Caenorhabditis briggsae]
|
KAI1718944.1 eukaryotic translation initiation factor 3 subunit 7 (eIF-3) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003743|GO:0005737|GO:0005852
|
GO:0005575_0.804|GO:0110165_0.804|GO:0005622_0.763|GO:0008150_0.755|GO:0005737_0.643|GO:0009987_0.640|GO:0003674_0.621|GO:0005488_0.564|GO:0008152_0.547|GO:0044238_0.547|GO:0009058_0.532|GO:0043170_0.530|GO:0044237_0.528|GO:0016020_0.521|GO:0009059_0.509|GO:0044249_0.509
|
IPR007783+1-580_3-575_4-567_6-555+
|
— |
PF05091+6-555+Eukaryotic_translation_initiation_factor_3_subunit_7_(eIF-3)
|
— |
PTHR12399+3-575+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
557-580
|
1.000
|
1-556
|
6fec_9
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
66193.540
|
9.038
|
11.000
|
28.103
|
11.552
|
51.897
|
48.103
|
15.345
|
12.759
|
49.138
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
orange
|
2983.482
|
3311.562
|
3248.007
|
4255.556
|
4458.334
|
4230.293
|
3277.973
|
3533.899
|
2481.856
|
1322.985
|
1819.644
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.257
|
0.225
|
0.498
|
— | — |
-0.358
|
-0.365
|
— | — | — | — | — | — |
No JSON data available for plots.