Hg_chrom3_TN10mRNA_5793
Organism: Heterodera glycines Gene Locus: chr3:7601453-7603643 Feature type: polypeptideProtein Sequence
Length: 354
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.953 | 0.854 | 1.284 | 0.682 | 0.612 | 1.376 | 0.74 | 1.13 | 1.507 | 1.183 | 0.3 | 1.496 | 1.334 | 1.412 | 1.614 | 0.565 | 1.065 | 0.942 | 0.652 | 1.163 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5503
|
— | — |
2.222
|
4.000
|
5.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.623
|
0.224
|
0.127
|
0.748
|
0.109
|
0.268
|
0.114
|
0.022
|
0.124
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000551
|
6.000
|
1.000
|
Hsc_gene_15815.t1
|
Hsc_gene_15815.t1
|
— |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAF7638997.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.857|GO:0003674_0.791|GO:0009987_0.783|GO:0005575_0.776|GO:0110165_0.773|GO:0003824_0.686|GO:0005622_0.662|GO:0005737_0.595|GO:0065007_0.592|GO:0016787_0.588|GO:0016020_0.585|GO:0050789_0.574|GO:0140096_0.574|GO:0050794_0.562|GO:0016788_0.558|GO:0016791_0.544|GO:0042578_0.544|GO:0004721_0.539|GO:0008152_0.511
|
IPR004843+109-307+|IPR006186+81-354_109-136_138-165_171-195_172-177_209-235_239-266_296-316_318-334+|IPR029052+46-353_81-353+|IPR050341+66-346+
|
SM00156+81-354+
|
PF00149+109-307+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+66-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-50
|
1.000
|
51-354
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
39897.630
|
6.683
|
1.000
|
22.881
|
11.864
|
42.373
|
57.627
|
12.147
|
10.734
|
51.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
551.448
|
184.177
|
74.959
|
134.024
|
307.197
|
1186.338
|
297.036
|
3062.770
|
2.764
|
443.077
|
254.371
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.527
|
-0.596
|
0.948
|
1.165
|
1.963
|
-1.987
|
1.256
|
-3.220
|
-7.497
|
5.902
|
— | — |
7.209
|
No JSON data available for plots.