Hg_chrom3_TN10mRNA_5795
Organism: Heterodera glycines Gene Locus: chr3:7608882-7611875 Feature type: polypeptideProtein Sequence
Length: 528
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.947 | 0.749 | 0.826 | 0.196 | 0.852 | 0.583 | 0.496 | 2.273 | 1.052 | 1.792 | 0.832 | 1.894 | 2.262 | 1.093 | 1.044 | 1.218 | 0.621 | 0.976 | 1.02 | 0.501 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5505
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
SKGKGEKRREFVGRK,RRSDGSKGKGEKRREF
|
— | — | — | — | — | — |
0.225
|
— | — |
0.083
|
0.119
|
0.062
|
0.186
|
0.910
|
0.213
|
0.399
|
0.196
|
0.270
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007862
|
1.000
|
1.000
|
Hsc_gene_5947.t1
|
Hsc_gene_5947.t1
|
— |
P08542.2 UDP-glucuronosyltransferase 2B17 [Rattus norvegicus]
|
KAH7725729.1 UGT-63 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.841|GO:0003674_0.730|GO:0009987_0.706|GO:0005575_0.680|GO:0110165_0.680|GO:0016020_0.642|GO:0003824_0.609|GO:0071944_0.573|GO:0016740_0.562|GO:0050896_0.559|GO:0005886_0.552|GO:0008152_0.552|GO:0005622_0.551|GO:0016757_0.536|GO:0016758_0.536|GO:0005737_0.533|GO:0043226_0.532|GO:0008194_0.527|GO:0043229_0.519|GO:0043227_0.516
|
IPR002213+30-475_36-481+|IPR035595+367-410+|IPR050271+20-514+
|
— |
PF00201+36-481+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+290-462+UDP-glucuronosyltransferase
|
PTHR48043+20-514+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-528
|
5nlm_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
59895.760
|
9.165
|
17.000
|
24.811
|
15.720
|
42.614
|
57.386
|
15.152
|
9.659
|
45.076
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
685.927
|
2446.108
|
1347.595
|
239.852
|
373.626
|
375.287
|
648.852
|
1012.262
|
257.351
|
391.573
|
334.049
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.091
|
-3.487
|
-2.381
|
0.607
|
— |
0.799
|
1.330
|
-0.501
|
— | — | — | — | — |
No JSON data available for plots.