Hg_chrom3_TN10mRNA_5798
Organism: Heterodera glycines Gene Locus: chr3:7630731-7631704 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.658 | 2.194 | 0.686 | 0.651 | 1.572 | 0.968 | 0.674 | 0.943 | 2.306 | 0.765 | 1.144 | 1.665 | 1.834 | 1.089 | 0.578 | 0.539 | 0.619 | 0.715 | 0.726 | 1.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5508
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.466
|
0.485
|
0.021
|
0.608
|
0.072
|
0.195
|
0.070
|
0.028
|
0.158
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007865
|
1.000
|
1.000
|
Hsc_gene_5955.t1
|
Hsc_gene_5955.t1
|
— |
O96952.1 Thioredoxin [Geodia cydonium]
|
KAI3420441.1 Thioredoxin-2 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015035
|
GO:0005575_0.841|GO:0110165_0.824|GO:0008150_0.760|GO:0005622_0.706|GO:0003674_0.641|GO:0005737_0.625|GO:0009987_0.578|GO:0043226_0.570|GO:0016020_0.563|GO:0043229_0.544|GO:0003824_0.517
|
IPR005746+1-106+|IPR013766+1-106_7-103+|IPR017937+25-43+|IPR036249+7-105+
|
— |
PF00085+7-103+Thioredoxin
|
G3DSA:3.40.30.10:FF:000245+1-106+Thioredoxin
|
PTHR46115+1-103+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
103-106
|
1.000
|
1-102
|
5dbq_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
12183.920
|
5.137
|
-2.000
|
25.472
|
13.208
|
46.226
|
53.774
|
12.264
|
13.208
|
44.340
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
115.184
|
167.257
|
375.015
|
122.171
|
31.695
|
28.929
|
27.623
|
148.219
|
27.988
|
145.099
|
94.908
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
-0.591
|
-1.509
|
-1.974
|
— | — |
2.257
|
-2.288
|
— | — | — | — | — |
No JSON data available for plots.