Hg_chrom3_TN10mRNA_5801
Organism: Heterodera glycines Gene Locus: chr3:7633414-7640154 Feature type: polypeptideProtein Sequence
Length: 1,606
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 0.985 | 0.917 | 0.751 | 1.225 | 1.213 | 0.63 | 1.152 | 0.789 | 1.599 | 0.764 | 1.319 | 1.159 | 0.934 | 1.423 | 1.441 | 0.684 | 0.783 | 0.814 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5510
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.846
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRVK,RKRFPSRLVRLRSWRK
|
— | — |
33-93
|
1.000
|
— | — |
0.000
|
— | — |
0.198
|
0.159
|
0.023
|
0.697
|
0.191
|
0.459
|
0.429
|
0.053
|
0.332
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001967
|
3.000
|
1.000
|
Hsc_gene_5958.t1
|
Hsc_gene_5957.t1;Hsc_gene_5958.t1
|
— |
Q3U0J8.2 TBC1 domain family member 2B [Mus musculus]
|
KAI1718951.1 rab-GTPase-TBC domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.904|GO:0110165_0.904|GO:0008150_0.853|GO:0005622_0.749|GO:0009987_0.664|GO:0016020_0.649|GO:0005737_0.609|GO:0065007_0.605|GO:0071944_0.525|GO:0005886_0.508
|
IPR000195+604-829_607-806_611-826+|IPR001849+67-172_68-174+|IPR011993+65-173+|IPR035969+583-766_742-859+|IPR036322+962-1188+|IPR050302+578-870+
|
SM00164+604-829+|SM00233+68-174+
|
PF00566+611-826+Rab-GTPase-TBC_domain
|
G3DSA:1.10.8.270:FF:000026+628-737+TBC_(Tre-2/Bub2/Cdc16)_domain_family
|
PTHR47219+578-870+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
178-391;1350-1524;1590-1606
|
3.000
|
1-177;392-1349;1525-1589
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
179992.490
|
7.096
|
12.500
|
26.712
|
9.589
|
49.938
|
50.062
|
14.321
|
12.391
|
48.692
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
3141.355
|
495.309
|
2376.148
|
686.175
|
308.356
|
645.577
|
1302.415
|
4900.694
|
11278.482
|
1266.566
|
5557.387
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.034
|
0.333
|
-1.684
|
-1.185
|
1.079
|
1.023
|
2.826
|
-1.772
|
3.035
|
-3.864
|
— | — | — |
No JSON data available for plots.