Hg_chrom3_TN10mRNA_5802
Organism: Heterodera glycines Gene Locus: chr3:7643369-7644538 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.284 | 1.208 | 0.885 | 1.12 | 0.758 | 1.166 | 0.696 | 1.136 | 1.515 | 1.097 | 0.59 | 0.573 | 1.533 | 0.562 | 1.391 | 1.438 | 0.639 | 0.984 | 0.999 | 0.477 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5511
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-26
|
0.984
|
20-58
|
0.997
|
— | — |
0.000
|
— | — |
0.105
|
0.907
|
0.004
|
0.192
|
0.040
|
0.116
|
0.040
|
0.004
|
0.031
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007866
|
1.000
|
1.000
|
Hsc_gene_5959.t1
|
Hsc_gene_5959.t1
|
— |
O35459.1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Mus musculus]
|
KAH7723614.1 enoyl-CoA hydratase/isomerase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016853
|
GO:0005575_0.798|GO:0110165_0.770|GO:0016020_0.670|GO:0008150_0.648|GO:0005622_0.635|GO:0005737_0.561|GO:0043226_0.560|GO:0043229_0.560|GO:0009987_0.555|GO:0043227_0.540|GO:0043231_0.530|GO:0003674_0.515
|
IPR001753+42-267+|IPR014748+245-299+|IPR029045+40-296+|IPR045002+38-300+
|
— |
PF00378+42-267+Enoyl-CoA_hydratase/isomerase
|
G3DSA:1.10.12.10:FF:000004+245-307+Delta3,5-delta2,4-dienoyl-CoA_isomerase|G3DSA:3.90.226.10:FF:000024+28-244+Delta3,5-delta2,4-dienoyl-CoA_isomerase
|
PTHR43149+38-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
288-308
|
1.000
|
1-287
|
1dci_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
33855.500
|
8.179
|
7.500
|
22.403
|
10.714
|
46.104
|
53.896
|
12.987
|
9.416
|
53.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
771.917
|
800.045
|
1154.301
|
1065.792
|
1101.090
|
945.341
|
991.180
|
1160.282
|
349.763
|
408.051
|
383.071
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.300
|
0.277
|
— | — |
-0.205
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.