Hg_chrom3_TN10mRNA_5803
Organism: Heterodera glycines Gene Locus: chr3:7645660-7648021 Feature type: polypeptideProtein Sequence
Length: 533
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.742 | 1.265 | 1.467 | 0.582 | 1.126 | 0.962 | 0.67 | 0.844 | 1.251 | 1.42 | 1.109 | 1.545 | 1.303 | 0.686 | 0.996 | 1.394 | 0.677 | 0.711 | 1.01 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5512
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PDKKRTR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.793
|
0.160
|
0.111
|
0.560
|
0.095
|
0.089
|
0.109
|
0.062
|
0.025
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007867
|
1.000
|
1.000
|
Hsc_gene_5960.t1
|
Hsc_gene_5960.t1
|
— |
Q9NUJ3.1 T-complex protein 11-like protein 1 [Homo sapiens]
|
KAI1730319.1 t-complex protein 11 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.906|GO:0005622_0.862|GO:0008150_0.761|GO:0009987_0.705|GO:0043226_0.676|GO:0043229_0.645|GO:0005737_0.639|GO:0016020_0.524
|
IPR008862+105-519+
|
— |
PF05794+105-519+T-complex_protein_11
|
— |
PTHR12832+105-519+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78
|
1.000
|
79-533
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
59769.660
|
5.139
|
-9.500
|
28.705
|
9.193
|
51.782
|
48.218
|
13.884
|
14.822
|
49.343
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
1113.842
|
1567.620
|
1036.847
|
1054.060
|
1253.188
|
1346.090
|
1211.675
|
1234.470
|
834.889
|
982.913
|
919.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.826
|
-0.710
|
0.132
|
0.218
|
— | — |
-0.231
|
— | — | — | — | — | — |
No JSON data available for plots.