Hg_chrom3_TN10mRNA_5806
Organism: Heterodera glycines Gene Locus: chr3:7659044-7663740 Feature type: polypeptideProtein Sequence
Length: 484
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.697 | 1.153 | 0.526 | 0.784 | 0.826 | 1.166 | 0.713 | 1.446 | 1.331 | 1.536 | 0.626 | 1.58 | 1.664 | 0.755 | 0.885 | 1.24 | 1.05 | 1.127 | 1.271 | 0.851 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5515
|
— | — |
0.667
|
— |
1.000
|
1.000
|
1.000
|
— | — |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.086
|
0.103
|
0.054
|
0.097
|
0.164
|
0.235
|
0.142
|
0.095
|
0.864
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007869
|
1.000
|
1.000
|
Hsc_gene_5963.t1
|
Hsc_gene_5963.t1
|
— | — |
KAI3420434.1 7 transmembrane receptor (rhodopsin) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0007218|GO:0008188|GO:0016020
|
GO:0008150_0.877|GO:0009987_0.842|GO:0065007_0.804|GO:0050789_0.780|GO:0050794_0.756|GO:0050896_0.748|GO:0003674_0.734|GO:0051716_0.730|GO:0007154_0.716|GO:0023052_0.713|GO:0007165_0.693|GO:0005575_0.673|GO:0110165_0.671|GO:0038023_0.611|GO:0060089_0.611|GO:0005488_0.584|GO:0007186_0.584|GO:0016020_0.563|GO:0004888_0.559
|
IPR000276+52-76_68-327_86-107_130-152_310-336+|IPR017452+67-328+|IPR039952+36-371+
|
— |
PF00001+68-327+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR21643+36-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
369-484
|
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
54357.820
|
7.982
|
10.000
|
19.215
|
13.430
|
43.802
|
56.198
|
11.364
|
7.851
|
48.554
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
501.192
|
607.598
|
1193.489
|
454.442
|
381.344
|
545.247
|
1241.248
|
986.476
|
116.013
|
77.015
|
93.728
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
-0.556
|
-1.284
|
-0.286
|
0.531
|
1.197
|
0.751
|
0.474
|
— |
2.148
|
— | — | — |
No JSON data available for plots.