Hg_chrom3_TN10mRNA_5807
Organism: Heterodera glycines Gene Locus: chr3:7669633-7670859 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.19 | 0.429 | 1.086 | 0.984 | 0.909 | 0.469 | 1.378 | 0.962 | 1.862 | 0.954 | 2.084 | 2.515 | 0.454 | 1.928 | 1.125 | 0.581 | 0.537 | 1.514 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5516
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.802
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKGNTEFEMDLAIWRRTGK,KRDSGKRRERGGESVRRETRRVRAEKK
|
20-40
|
0.877
|
— | — | — | — |
0.000
|
— | — |
0.202
|
0.121
|
0.009
|
0.274
|
0.135
|
0.149
|
0.231
|
0.009
|
0.604
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007870
|
1.000
|
1.000
|
Hsc_gene_5964.t1
|
Hsc_gene_5964.t1
|
— | — |
KAI1718880.1 ATPase family associated with various cellular activities (AAA) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
190-254
|
1.000
|
1-189
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
29984.190
|
10.647
|
22.500
|
26.772
|
15.354
|
46.850
|
53.150
|
18.504
|
8.268
|
37.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
111.662
|
246.091
|
144.005
|
42.698
|
30.009
|
79.702
|
42.049
|
40.913
|
123.376
|
161.440
|
145.127
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.004
|
-2.664
|
-1.643
|
-0.542
|
1.425
|
-0.916
|
-1.068
|
— | — | — | — | — | — |
No JSON data available for plots.