Hg_chrom3_TN10mRNA_5808
Organism: Heterodera glycines Gene Locus: chr3:7672705-7676022 Feature type: polypeptideProtein Sequence
Length: 563
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 1.198 | 0.904 | 0.796 | 1.48 | 0.729 | 0.698 | 0.799 | 1.421 | 1.44 | 1.13 | 1.254 | 1.579 | 0.854 | 1.051 | 0.863 | 0.99 | 0.754 | 1.093 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5517
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.579
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.345
|
0.314
|
0.039
|
0.632
|
0.307
|
0.081
|
0.123
|
0.113
|
0.128
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003622
|
1.000
|
2.000
|
Hsc_gene_25922.t1;Hsc_gene_5965.t1
|
Hsc_gene_5965.t1
|
— |
Q22017.1 Probable FAD synthase [Caenorhabditis elegans]
|
KAI1728466.1 putative molybdopterin binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.879|GO:0110165_0.865|GO:0008150_0.815|GO:0005622_0.784|GO:0003674_0.747|GO:0005737_0.741|GO:0008152_0.670|GO:0016020_0.551|GO:0009987_0.521
|
IPR001453+70-241_72-238_72-245+|IPR002500+368-517_368-523+|IPR014729+325-556+|IPR036425+67-244_67-247+
|
SM00852+72-245+
|
PF00994+72-238+Probable_molybdopterin_binding_domain|PF01507+368-523+Phosphoadenosine_phosphosulfate_reductase_family
|
— |
PTHR23293+106-556+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;553-563
|
1.000
|
25-552
|
8rom_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
64244.750
|
6.103
|
-2.500
|
28.064
|
11.368
|
48.135
|
51.865
|
14.210
|
13.854
|
45.115
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1349.714
|
1269.156
|
1205.612
|
1057.247
|
1242.069
|
1264.263
|
1152.534
|
1159.741
|
1025.958
|
2004.047
|
1584.866
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.304
|
-0.401
|
— |
0.201
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.