Hg_chrom3_TN10mRNA_5812
Organism: Heterodera glycines Gene Locus: chr3:7687621-7688872 Feature type: polypeptideProtein Sequence
Length: 415
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 1.457 | 0.745 | 0.083 | 1.968 | 2.41 | 1.119 | 1.687 | 0.535 | 0.651 | 0.949 | 1.701 | 1.874 | 1.297 | 0.885 | 1.205 | 0.514 | 0.256 | 0.185 | 0.071 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5520
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
nucleus
|
KRAKKQGKKHHGKGGGGHRHKHRNGR
|
— | — | — | — |
1-23
|
0.979
|
1.000
|
0.000
|
0.000
|
0.419
|
0.178
|
0.029
|
0.326
|
0.073
|
0.009
|
0.080
|
0.070
|
0.083
|
0.948
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007872
|
1.000
|
1.000
|
Hsc_gene_5971.t1
|
Hsc_gene_5970.t1;Hsc_gene_5971.t1
|
— | — |
KAI3420429.1 hypothetical protein GPALN_003726 [Globodera pallida]
|
VVB04448
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-415
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
46075.190
|
4.897
|
-15.000
|
29.880
|
10.602
|
57.108
|
42.892
|
13.976
|
15.904
|
47.470
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
6141.104
|
736.642
|
3532.597
|
1477.961
|
372.503
|
61.408
|
45.317
|
830.064
|
32024.616
|
202.686
|
13840.656
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.034
|
0.867
|
-1.149
|
-2.021
|
-2.586
|
-0.429
|
3.657
|
-4.056
|
7.185
|
-4.262
|
— | — |
4.666
|