Hg_chrom3_TN10mRNA_5815
Organism: Heterodera glycines Gene Locus: chr3:7693480-7696501 Feature type: polypeptideProtein Sequence
Length: 650
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 0.894 | 0.839 | 1.061 | 1.128 | 1.538 | 0.989 | 1.538 | 0.547 | 0.79 | 0.886 | 2.262 | 1.41 | 1.272 | 1.13 | 1.055 | 0.883 | 0.629 | 1.538 | 0.679 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5523
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.680
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KKLHRYGYGHRFKRA,KRTMVLQHEMDFMRKVRP,KKNAEQNMALMGQRKKLS
|
— | — | — | — |
1-24
|
0.979
|
1.000
|
0.000
|
0.000
|
0.252
|
0.112
|
0.044
|
0.250
|
0.163
|
0.047
|
0.203
|
0.027
|
0.084
|
0.861
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007874
|
1.000
|
1.000
|
Hsc_gene_5973.t1
|
Hsc_gene_5973.t1
|
— |
Q21388.2 Zinc metalloproteinase nas-10 [Caenorhabditis elegans]
|
KAI3420427.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.777|GO:0005575_0.679|GO:0110165_0.679|GO:0003674_0.629|GO:0032501_0.570|GO:0032502_0.521|GO:0048856_0.521|GO:0009987_0.509
|
IPR001506+410-611_415-611_438-456_497-515_516-533_555-570_597-610+|IPR003582+610-650_613-650+|IPR006026+412-560+|IPR024079+342-613+|IPR034035+419-609+
|
SM00235+412-560+|SM00254+613-650+
|
PF01400+415-611+Astacin_(Peptidase_family_M12A)|PF01549+613-650+ShK_domain-like
|
— |
PTHR10127+350-645+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-284
|
1.000
|
285-650
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
72692.930
|
7.436
|
10.000
|
25.846
|
12.462
|
48.462
|
51.538
|
14.462
|
11.385
|
51.231
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
2220.401
|
1344.094
|
2572.350
|
4107.897
|
4293.367
|
2827.213
|
1503.875
|
4347.695
|
211.384
|
1682.030
|
1051.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
1.475
|
0.783
|
— |
-0.588
|
-0.901
|
0.520
|
-1.391
|
-3.119
|
4.382
|
— | — | — |