Hg_chrom3_TN10mRNA_5816
Organism: Heterodera glycines Gene Locus: chr3:7705703-7708829 Feature type: polypeptideProtein Sequence
Length: 679
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.01 | 0.959 | 0.643 | 0.813 | 0.908 | 0.831 | 0.701 | 1.252 | 1.702 | 1.254 | 0.736 | 1.126 | 1.432 | 0.878 | 1.112 | 1.515 | 0.99 | 0.893 | 1.246 | 0.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5524
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
GRKRPSKRRNSAKRSDAKV
|
23-55
|
0.952
|
1-39
|
0.974
|
— | — |
0.000
|
— | — |
0.085
|
0.180
|
0.029
|
0.181
|
0.389
|
0.309
|
0.376
|
0.102
|
0.718
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007875
|
1.000
|
1.000
|
Hsc_gene_5974.t1
|
Hsc_gene_5974.t1
|
— |
Q9P2U8.1 Vesicular glutamate transporter 2 [Homo sapiens]
|
XP_024508187.1 Sialin [Strongyloides ratti];CEF68987.1 Sialin [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.965|GO:0009987_0.888|GO:0005575_0.869|GO:0110165_0.868|GO:0003674_0.780|GO:0006810_0.771|GO:0051179_0.771|GO:0051234_0.771|GO:0016020_0.768|GO:0071944_0.741|GO:0005886_0.730|GO:0055085_0.690|GO:0005215_0.619|GO:0022857_0.619|GO:0005622_0.610|GO:0043226_0.587|GO:0043229_0.563|GO:0043227_0.520|GO:0015711_0.508|GO:0005737_0.501
|
IPR011701+139-497+|IPR020846+34-541+|IPR036259+22-537_130-310_345-544+|IPR050382+32-546+
|
— |
PF07690+139-497+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000532+129-535+SLC_(SoLute_Carrier)_homolog
|
PTHR11662+32-546+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
548-679
|
1.000
|
1-547
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
74651.850
|
8.490
|
17.500
|
21.797
|
10.457
|
45.803
|
54.197
|
12.813
|
8.984
|
51.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
465.613
|
398.040
|
120.651
|
103.488
|
368.439
|
2923.448
|
738.879
|
372.017
|
16.624
|
140.230
|
87.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.955
|
-2.081
|
— |
1.800
|
3.005
|
-1.976
|
-3.092
|
1.137
|
— | — | — | — | — |
No JSON data available for plots.