SCN Proteipedia

Hg_chrom3_TN10mRNA_5819

Organism: Heterodera glycines Gene Locus: chr3:7716116-7719244 Feature type: polypeptide

Protein Sequence

Length: 507

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.665	1.009	1.291	0.408	1.446	1.467	0.869	1.282	1.096	0.8	0.837	0.58	1.315	1.252	1.489	0.958	0.776	1.046	0.607	0.696	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5526	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	ERERDRKEKRPRK,RKVDQKAKISIPMTSRKRE	—	—	—	—	—	—	0.000	—	—	0.924	0.099	0.002	0.323	0.054	0.008	0.020	0.009	0.019	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001969	2.000	2.000	Hsc_gene_5977.t1;Hsc_gene_5977.t2	Hsc_gene_5977.t1;Hsc_gene_5977.t2	—	D0VWM8.1 Tar DNA-binding protein homolog 1 [Caenorhabditis elegans]	KAI1720152.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.883\|GO:0110165_0.877\|GO:0008150_0.852\|GO:0005622_0.791\|GO:0003674_0.783\|GO:0009987_0.772\|GO:0043226_0.763\|GO:0005488_0.754\|GO:0016020_0.730\|GO:0043229_0.726\|GO:0008152_0.689\|GO:0043170_0.675\|GO:0043227_0.669\|GO:0065007_0.666\|GO:0050789_0.660\|GO:0044238_0.655\|GO:0043231_0.647\|GO:0050794_0.646\|GO:0097159_0.646\|GO:0044237_0.641\|GO:0003676_0.632\|GO:0009058_0.631\|GO:0009059_0.625\|GO:0044249_0.625\|GO:0010467_0.622\|GO:0006139_0.620\|GO:0090304_0.603\|GO:0003723_0.591\|GO:0016070_0.576\|GO:0005634_0.562\|GO:0019222_0.528\|GO:0060255_0.524\|GO:0031323_0.502	IPR000504+207-275_208-279_209-276_299-380_300-374+\|IPR012677+134-288_292-383+\|IPR035979+208-287_298-403+\|IPR041105+37-112+	SM00360+208-279_300-374+	PF00076+209-276+RNA_recognition_motif\|PF18694+37-112+TAR_DNA-binding_protein_43,_N-terminal_domain	—	PTHR48033+174-466+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-9;100-198;374-507	2.000	10-99;199-373	4y00_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.589	57186.650	5.428	-8.500	31.164	10.454	52.663	47.337	15.385	15.779	50.493

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	tan	1201.131	1544.125	1276.343	1301.294	1270.882	1311.029	1614.165	1018.981	1374.239	722.962	1002.081

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.504	-0.384	0.137	—	—	0.311	-0.468	0.806	—	—	—	—	—

No JSON data available for plots.

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