Hg_chrom3_TN10mRNA_5822
Organism: Heterodera glycines Gene Locus: chr3:7727435-7729787 Feature type: polypeptideProtein Sequence
Length: 451
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 1.083 | 1.129 | 0.688 | 1.367 | 1.08 | 0.871 | 1.22 | 1.133 | 1.109 | 0.571 | 2.087 | 1.478 | 0.81 | 1.222 | 0.792 | 0.909 | 0.907 | 0.682 | 0.913 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5529
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRVTEQFNAMFRRKAF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.314
|
0.237
|
0.089
|
0.697
|
0.109
|
0.148
|
0.141
|
0.048
|
0.147
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000302
|
5.000
|
4.000
|
Hsc_gene_18906.t1;Hsc_gene_24340.t1;Hsc_gene_558.t1;Hsc_gene_5981.t1
|
Hsc_gene_5981.t1
|
— |
O17449.1 Tubulin beta-1 chain [Manduca sexta]
|
KAI3420423.1 Tubulin beta-2B chain, variant 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
|
GO:0005575_0.792|GO:0110165_0.779|GO:0008150_0.754|GO:0005622_0.646|GO:0009987_0.616|GO:0016020_0.610|GO:0043226_0.556|GO:0043229_0.514
|
IPR000217+1-426_10-30_51-70_93-104_106-130_132-150_151-172_176-189_190-210_370-398+|IPR002453+41-58_88-99_108-126_152-164_212-224_230-239_245-258_265-281_311-329_329-343_347-370_377-388_412-430+|IPR003008+3-211_47-244+|IPR008280+244-429+|IPR013838+1-4+|IPR017975+140-146+|IPR018316+246-383_261-382+|IPR023123+374-430+|IPR036525+1-243_1-263+|IPR037103+264-373+
|
SM00864+47-244+|SM00865+246-383+
|
PF00091+3-211+Tubulin/FtsZ_family,_GTPase_domain|PF03953+261-382+Tubulin_C-terminal_domain
|
G3DSA:1.10.287.600:FF:000006+374-446+Tubulin_beta_chain|G3DSA:3.30.1330.20:FF:000002+264-373+Tubulin_beta_chain|G3DSA:3.40.50.1440:FF:000006+1-263+Tubulin_beta_chain
|
PTHR11588+1-426+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
413-451
|
1.000
|
1-412
|
8v4m_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
50728.310
|
4.755
|
-15.500
|
26.608
|
11.752
|
46.563
|
53.437
|
12.195
|
14.412
|
49.224
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
559.695
|
783.545
|
1832.820
|
459.995
|
146.050
|
125.366
|
69.010
|
646.075
|
104.789
|
846.502
|
528.625
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.996
|
-0.906
|
-1.885
|
-1.687
|
— |
-0.851
|
2.264
|
-3.086
|
-3.136
|
— | — | — | — |
No JSON data available for plots.