Hg_chrom3_TN10mRNA_5823
Organism: Heterodera glycines Gene Locus: chr3:7730138-7731774 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.074 | 1.011 | 0.791 | 0.75 | 1.132 | 0.836 | 0.809 | 0.272 | 1.329 | 1.836 | 0.865 | 0.959 | 1.434 | 0.941 | 1.497 | 1.009 | 0.401 | 0.782 | 0.418 | 0.879 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5530
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.815
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
endoplasmic_reticulum
|
nucleus
|
RRKALVEKEREGKKEEKKE
|
— | — | — | — | — |
0.619
|
0.000
|
1.000
|
— |
0.182
|
0.397
|
0.081
|
0.238
|
0.864
|
0.158
|
0.146
|
0.017
|
0.138
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007877
|
1.000
|
1.000
|
Hsc_gene_5982.t1
|
Hsc_gene_5982.t1
|
— |
Q7Q732.3 Dehydrogenase/reductase SDR family protein 7-like [Anopheles gambiae]
|
KAI3420422.1 Tubulin beta-2B chain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.782|GO:0110165_0.782|GO:0008150_0.714|GO:0005622_0.683|GO:0016020_0.650|GO:0003674_0.626|GO:0005737_0.607|GO:0043226_0.598|GO:0009987_0.575|GO:0043229_0.572|GO:0043227_0.528|GO:0003824_0.511
|
IPR002347+87-281_88-105_174-185_219-235_225-233_245-264_265-282+|IPR020904+232-260+|IPR036291+82-351+
|
— |
PF00106+87-281+short_chain_dehydrogenase
|
— |
PTHR44196+79-360+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
362-368
|
1.000
|
1-361
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
41005.590
|
8.798
|
8.000
|
24.728
|
9.239
|
41.848
|
58.152
|
13.587
|
11.141
|
46.467
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
midnightblue
|
1178.745
|
1088.426
|
1311.004
|
1208.073
|
1089.582
|
1204.737
|
805.034
|
1465.053
|
1100.389
|
1267.252
|
1195.739
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.181
|
0.160
|
-0.572
|
— |
-0.722
|
— | — | — | — | — |