Hg_chrom3_TN10mRNA_5825
Organism: Heterodera glycines Gene Locus: chr3:7740546-7742092 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.491 | 1.883 | 0.832 | 0.607 | 0.587 | 1.174 | 0.545 | 1.585 | 1.956 | 1.19 | 1.014 | 0.829 | 2.25 | 0.745 | 1.078 | 1.258 | 1.039 | 0.64 | 1.083 | 0.518 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5532
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.917
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.677
|
0.184
|
0.026
|
0.471
|
0.095
|
0.124
|
0.086
|
0.235
|
0.079
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002917
|
2.000
|
1.000
|
Hsc_gene_5984.t2
|
— | — |
Q3SWZ7.1 Telomerase Cajal body protein 1 [Bos taurus]
|
KAI3420419.1 Telomerase Cajal body protein 1 [Globodera pallida]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.648|GO:0110165_0.646|GO:0008150_0.607|GO:0016020_0.607|GO:0005622_0.570|GO:0009987_0.557|GO:0043226_0.555|GO:0043229_0.547|GO:0005737_0.521|GO:0043227_0.520|GO:0043231_0.517
|
IPR015943+12-221+|IPR051150+82-221+
|
— | — | — |
PTHR13211+82-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-59
|
1.000
|
60-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
32601.370
|
10.035
|
15.500
|
23.239
|
14.437
|
51.056
|
48.944
|
15.141
|
8.099
|
46.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
34.838
|
72.247
|
48.891
|
51.113
|
51.646
|
37.847
|
50.935
|
38.748
|
13.467
|
10.529
|
11.788
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.794
|
-0.636
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.