Hg_chrom3_TN10mRNA_5829
Organism: Heterodera glycines Gene Locus: chr3:7756081-7759111 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 1.085 | 0.583 | 0.402 | 0.486 | 0.822 | 0.833 | 1.02 | 1.684 | 1.418 | 0.618 | 1.886 | 2.025 | 0.561 | 1.487 | 1.041 | 0.765 | 1.325 | 1.346 | 1.2 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5536
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
43-67
|
0.875
|
— | — | — | — |
0.000
|
— | — |
0.095
|
0.840
|
0.072
|
0.104
|
0.114
|
0.105
|
0.097
|
0.307
|
0.173
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007880
|
1.000
|
1.000
|
Hsc_gene_5986.t1
|
Hsc_gene_5986.t1
|
— |
Q8BGF9.1 Solute carrier family 25 member 44 [Mus musculus]
|
KAI1715945.1 mitochondrial carrier protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005739|GO:0009083|GO:0015658
|
GO:0008150_0.790|GO:0005575_0.765|GO:0110165_0.753|GO:0016020_0.708|GO:0009987_0.673|GO:0005622_0.662|GO:0005737_0.657|GO:0043226_0.632|GO:0043229_0.626|GO:0043227_0.610|GO:0043231_0.598|GO:0003674_0.555
|
IPR018108+19-105_33-107_114-222_116-223_250-331_254-331+|IPR023395+18-327_24-168_169-339+|IPR042164+8-343+
|
— |
PF00153+33-107_116-223_254-331+Mitochondrial_carrier_protein
|
— |
PTHR46314+8-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-343
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
39094.830
|
10.368
|
21.500
|
19.534
|
15.160
|
39.359
|
60.641
|
13.411
|
6.122
|
46.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1322.321
|
2554.071
|
1705.435
|
1604.300
|
1470.930
|
1438.286
|
1355.396
|
1883.891
|
548.428
|
869.216
|
731.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.813
|
-0.808
|
— |
-0.157
|
— | — |
0.284
|
-0.332
|
— | — | — | — | — |
No JSON data available for plots.