Hg_chrom3_TN10mRNA_5830
Organism: Heterodera glycines Gene Locus: chr3:7759435-7761327 Feature type: polypeptideProtein Sequence
Length: 243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 0.957 | 0.823 | 1.135 | 1.235 | 0.844 | 0.245 | 2.675 | 0.823 | 1.112 | 0.935 | 1.21 | 2.058 | 1.108 | 1.68 | 0.823 | 0.337 | 1.185 | 2.849 | 0.484 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5537
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.738
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
28-50
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.152
|
0.805
|
0.021
|
0.295
|
0.162
|
0.044
|
0.131
|
0.008
|
0.056
|
0.322
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007881
|
1.000
|
1.000
|
Hsc_gene_5987.t1
|
Hsc_gene_5987.t1
|
— |
Q9D1P0.1 Large ribosomal subunit protein uL13m [Mus musculus]
|
KAH7721951.1 Protein MRPL-13 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.866|GO:0110165_0.866|GO:0005622_0.791|GO:0016020_0.750|GO:0005737_0.742|GO:0043226_0.737|GO:0043229_0.728|GO:0043227_0.678|GO:0043231_0.667|GO:0005739_0.523
|
IPR005822+49-171_49-195_51-167_51-179+|IPR036899+36-215_42-183+
|
— |
PF00572+49-171+Ribosomal_protein_L13
|
— |
PTHR11545+49-195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
241-243
|
1.000
|
1-240
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
28876.300
|
8.693
|
12.500
|
31.687
|
18.107
|
46.914
|
53.086
|
19.753
|
11.934
|
42.798
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1462.895
|
2329.349
|
1397.640
|
1052.916
|
1106.928
|
854.961
|
1213.554
|
1608.166
|
1041.756
|
2032.532
|
1607.914
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.966
|
-1.283
|
-0.300
|
— |
-0.357
|
0.517
|
0.807
|
-0.262
|
— | — | — | — | — |
No JSON data available for plots.