SCN Proteipedia

Hg_chrom3_TN10mRNA_5832

Organism: Heterodera glycines Gene Locus: chr3:7766219-7769899 Feature type: polypeptide

Protein Sequence

Length: 639

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.037	1.055	0.967	0.594	0.991	0.843	1.155	1.721	1.148	1.205	0.593	1.197	1.087	0.752	1.405	0.872	0.975	0.948	0.843	0.875	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5539	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	13-36	0.931	—	—	—	—	0.000	—	—	0.122	0.952	0.017	0.173	0.043	0.039	0.029	0.021	0.056	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007883	1.000	1.000	Hsc_gene_5989.t1	Hsc_gene_5989.t1	—	Q8WSR3.1 Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial [Ascaris suum]	KAI3420412.1 Succinate dehydrogenase (Flavoprotein subunit) [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006099\|GO:0016491\|GO:0016627\|GO:0022900\|GO:0050660	GO:0005575_0.861\|GO:0110165_0.858\|GO:0008150_0.764\|GO:0016020_0.761\|GO:0009987_0.694\|GO:0005622_0.670\|GO:0005737_0.636\|GO:0008152_0.606\|GO:0043226_0.605\|GO:0003674_0.586\|GO:0043229_0.580\|GO:0044237_0.560\|GO:0043227_0.554\|GO:0043231_0.542	IPR003952+70-79+\|IPR003953+36-432+\|IPR011281+33-639+\|IPR014006+36-591+\|IPR015939+487-639+\|IPR027477+264-382_274-377+\|IPR030664+23-639+\|IPR036188+28-457_36-440+\|IPR037099+478-639+	—	PF00890+36-432+FAD_binding_domain\|PF02910+487-639+Fumarate_reductase_flavoprotein_C-term	G3DSA:1.20.58.100:FF:000001+458-574+Succinate_dehydrogenase_flavoprotein_subunit_(SdhA)\|G3DSA:3.50.50.60:FF:000482+24-251+Succinate_dehydrogenase_complex,_subunit_A,_flavoprotein_(Fp)\|G3DSA:3.90.700.10:FF:000001+274-377+Mitochondrial_succinate_dehydrogenase_flavoprotein_subunit\|G3DSA:4.10.80.40:FF:000004+575-639+Succinate_dehydrogenase_[ubiquinone]_flavoprotein_subunit,_mitochondrial	PTHR11632+23-639+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-639	5c3j_E	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.732	70258.480	7.179	8.000	25.509	11.424	45.383	54.617	14.241	11.268	52.426

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	lightcyan	3212.401	3742.928	3863.863	4439.122	5038.587	4268.159	3519.580	3092.802	2017.020	2054.597	2038.493

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.183	0.109	0.308	0.151	-0.225	-0.268	-0.571	0.330	—	—	—	—	—

No JSON data available for plots.

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